Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja3g2564 | ATGGGAAAGAAAAAGACGGACGATGCAGGCCAGTCTACGAAGGCCAAAGCTAGTAGCAAAGATGCTCCTAAGAAAGAAAAAATTTATGTCGCTGTCATGTTGGCCAGTATGGATGAAAAGCCTGATAAAGCAGAAAAAGTAGCTTCTTCCTCCAATAAGCCCAAGCCAAAACCGAAAGCTTCTACTTACACTGATGGTATTGATCTTCCTCCCTCTGATGATGATGATGACGATCTATCTGAAGATGAGTCCAAACAGTCCATACCTGATTTCAAGCCACTTGAAGTGTCTGTTAAAGACAAAGAGTTGACAAAACGTGAGAAGAAAGATATTTTGGCTGCCCATGTTGTTGAGCAGGCAAAGAAGGAAGCTCTTAGGGATGATCATGATGCTTTTACTGTTAATGATGTTGATGCTAATGTTAAAGATATAACGGTGGAAAATTTTTCTGTGTCTGCTCGAGGTAAGGAACTTCTGAAAAATACATCGGTGAAGATATCTCATGGGAAGCGATATGGTTTGGTTGGGCCCAATGGAATAGGCAAGTCCACACTACTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAAAATATCGATGTCCTTCTGGTTGAGCAGGAGATAGTTGGGGATGATAAAATAGCACTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTGTTAATGTTCGACAAGAAGTTGCTGCTCTCACAAATGCAGCTTCTGTTGAGGAAATAGCAGAGCTGTATGAAAAATTGCAGCTGATGGGGTCTGATGCTGCTGAATCTCAAGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGCGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTATTACTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGTTGGAAAAAAACTTTGGTGGTTGTCTCTCATGATAGGGATTTCCTGAATACAGTATGCATTGAGATTATTCATCTCCATGATTTGAAGCTTCATCTCTATCGTGGAAACTTTGATGATTTTGAGAGTGGGTATGAACAACGTCGTAAAGAGATTAATAAGAAGTATGAGATTTATGACAAGAAAATGAAAGCAGCTAAAAGGAGTGGAAACCGGGCTCAACAAGAAAAGGTGAAGGATCGAGCTAAGTTTGCCACAGCTAAGGAAGCATCTAAATACAAGGGTAAGGGCAAGGGCAAGGTTAATGAGGATGAGATCACACTAAAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTATGCAGCTTATTGAAGTGAGCTTCACCTACCCAAACCGAGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACATTGCTAAATCTTCTGGCTGGTGATTTGGTTCCATCTGAAGGTGAAGTTCAAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACTTTCTGACAATGGATGAAACTCCTATGCAGTACCTTCTCCGTCTCCACCCAGACCAGGAGGGACTTAGCAAGCAAGAGGCTGTTCGTGCAAAGATTGGTAAGTTTGGGCTGCCTAGTCATAACCATCTTACCCCTATTGTGAAACTATCAGGAGGGCAAAAAGCTCGGGTGGTCTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTTATTGATGCATTGGCTGATGCATTGGATGAATTCACTGGAGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCATGTGTTTGTGACGATGAAGAAAGGAGTCAAATATGGATTGTTGAGGATGGCACTGTCAGAAATTTCCCTGGAACATTTGAGGATTACAAGGATGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTAA | 2004 | 0.4187 | MGKKKTDDAGQSTKAKASSKDAPKKEKIYVAVMLASMDEKPDKAEKVASSSNKPKPKPKASTYTDGIDLPPSDDDDDDLSEDESKQSIPDFKPLEVSVKDKELTKREKKDILAAHVVEQAKKEALRDDHDAFTVNDVDANVKDITVENFSVSARGKELLKNTSVKISHGKRYGLVGPNGIGKSTLLKLLAWRKIPVPKNIDVLLVEQEIVGDDKIALEAVVSANVELVNVRQEVAALTNAASVEEIAELYEKLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCIEIIHLHDLKLHLYRGNFDDFESGYEQRRKEINKKYEIYDKKMKAAKRSGNRAQQEKVKDRAKFATAKEASKYKGKGKGKVNEDEITLKFHFPEPTELTPPLMQLIEVSFTYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVQRSQKLRIGRYSQHFVDFLTMDETPMQYLLRLHPDQEGLSKQEAVRAKIGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILFIDALADALDEFTGGVVLVSHDSRLISCVCDDEERSQIWIVEDGTVRNFPGTFEDYKDDLLKEIKAEVDD* | 668 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja3g2564 | 667 | Pfam | ABC transporter | 159 | 314 | IPR003439 | GO:0005524 | |
Lja3g2564 | 667 | Pfam | ABC transporter | 469 | 600 | IPR003439 | GO:0005524 | |
Lja3g2564 | 667 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 452 | 665 | IPR003439 | GO:0005524 | |
Lja3g2564 | 667 | MobiDBLite | consensus disorder prediction | 69 | 83 | - | - | |
Lja3g2564 | 667 | Gene3D | - | 107 | 396 | IPR027417 | - | |
Lja3g2564 | 667 | Gene3D | - | 415 | 666 | IPR027417 | - | |
Lja3g2564 | 667 | CDD | ABCF_EF-3 | 453 | 642 | - | - | |
Lja3g2564 | 667 | Coils | Coil | 378 | 398 | - | - | |
Lja3g2564 | 667 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 432 | 652 | IPR027417 | - | |
Lja3g2564 | 667 | CDD | ABCF_EF-3 | 144 | 359 | - | - | |
Lja3g2564 | 667 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 143 | 381 | IPR027417 | - | |
Lja3g2564 | 667 | SMART | AAA_5 | 168 | 358 | IPR003593 | - | |
Lja3g2564 | 667 | SMART | AAA_5 | 478 | 642 | IPR003593 | - | |
Lja3g2564 | 667 | ProSitePatterns | ABC transporters family signature. | 286 | 300 | IPR017871 | GO:0005524 | |
Lja3g2564 | 667 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 144 | 389 | IPR003439 | GO:0005524 | |
Lja3g2564 | 667 | PANTHER | - | 4 | 667 | - | - | |
Lja3g2564 | 667 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 4 | 667 | - | - | |
Lja3g2564 | 667 | MobiDBLite | consensus disorder prediction | 38 | 52 | - | - | |
Lja3g2564 | 667 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja3g2564 | Lja-Chr3 | 34164549 | 34166701 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja3g2564 | 451 | 607 | Calmodulin-binding Proteins | AT2G36910 | 29.282 | 1.23e-10 | 63.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja3g2564 | K06184 | - | gmx:100806865 | 1080.86 |