LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g2564	ATGGGAAAGAAAAAGACGGACGATGCAGGCCAGTCTACGAAGGCCAAAGCTAGTAGCAAAGATGCTCCTAAGAAAGAAAAAATTTATGTCGCTGTCATGTTGGCCAGTATGGATGAAAAGCCTGATAAAGCAGAAAAAGTAGCTTCTTCCTCCAATAAGCCCAAGCCAAAACCGAAAGCTTCTACTTACACTGATGGTATTGATCTTCCTCCCTCTGATGATGATGATGACGATCTATCTGAAGATGAGTCCAAACAGTCCATACCTGATTTCAAGCCACTTGAAGTGTCTGTTAAAGACAAAGAGTTGACAAAACGTGAGAAGAAAGATATTTTGGCTGCCCATGTTGTTGAGCAGGCAAAGAAGGAAGCTCTTAGGGATGATCATGATGCTTTTACTGTTAATGATGTTGATGCTAATGTTAAAGATATAACGGTGGAAAATTTTTCTGTGTCTGCTCGAGGTAAGGAACTTCTGAAAAATACATCGGTGAAGATATCTCATGGGAAGCGATATGGTTTGGTTGGGCCCAATGGAATAGGCAAGTCCACACTACTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAAAATATCGATGTCCTTCTGGTTGAGCAGGAGATAGTTGGGGATGATAAAATAGCACTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTGTTAATGTTCGACAAGAAGTTGCTGCTCTCACAAATGCAGCTTCTGTTGAGGAAATAGCAGAGCTGTATGAAAAATTGCAGCTGATGGGGTCTGATGCTGCTGAATCTCAAGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGCGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTATTACTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGTTGGAAAAAAACTTTGGTGGTTGTCTCTCATGATAGGGATTTCCTGAATACAGTATGCATTGAGATTATTCATCTCCATGATTTGAAGCTTCATCTCTATCGTGGAAACTTTGATGATTTTGAGAGTGGGTATGAACAACGTCGTAAAGAGATTAATAAGAAGTATGAGATTTATGACAAGAAAATGAAAGCAGCTAAAAGGAGTGGAAACCGGGCTCAACAAGAAAAGGTGAAGGATCGAGCTAAGTTTGCCACAGCTAAGGAAGCATCTAAATACAAGGGTAAGGGCAAGGGCAAGGTTAATGAGGATGAGATCACACTAAAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTATGCAGCTTATTGAAGTGAGCTTCACCTACCCAAACCGAGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACATTGCTAAATCTTCTGGCTGGTGATTTGGTTCCATCTGAAGGTGAAGTTCAAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACTTTCTGACAATGGATGAAACTCCTATGCAGTACCTTCTCCGTCTCCACCCAGACCAGGAGGGACTTAGCAAGCAAGAGGCTGTTCGTGCAAAGATTGGTAAGTTTGGGCTGCCTAGTCATAACCATCTTACCCCTATTGTGAAACTATCAGGAGGGCAAAAAGCTCGGGTGGTCTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTTATTGATGCATTGGCTGATGCATTGGATGAATTCACTGGAGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCATGTGTTTGTGACGATGAAGAAAGGAGTCAAATATGGATTGTTGAGGATGGCACTGTCAGAAATTTCCCTGGAACATTTGAGGATTACAAGGATGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTAA	2004	0.4187	MGKKKTDDAGQSTKAKASSKDAPKKEKIYVAVMLASMDEKPDKAEKVASSSNKPKPKPKASTYTDGIDLPPSDDDDDDLSEDESKQSIPDFKPLEVSVKDKELTKREKKDILAAHVVEQAKKEALRDDHDAFTVNDVDANVKDITVENFSVSARGKELLKNTSVKISHGKRYGLVGPNGIGKSTLLKLLAWRKIPVPKNIDVLLVEQEIVGDDKIALEAVVSANVELVNVRQEVAALTNAASVEEIAELYEKLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCIEIIHLHDLKLHLYRGNFDDFESGYEQRRKEINKKYEIYDKKMKAAKRSGNRAQQEKVKDRAKFATAKEASKYKGKGKGKVNEDEITLKFHFPEPTELTPPLMQLIEVSFTYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVQRSQKLRIGRYSQHFVDFLTMDETPMQYLLRLHPDQEGLSKQEAVRAKIGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILFIDALADALDEFTGGVVLVSHDSRLISCVCDDEERSQIWIVEDGTVRNFPGTFEDYKDDLLKEIKAEVDD*	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g2564	667	Pfam	ABC transporter	159	314	IPR003439	GO:0005524
	Lja3g2564	667	Pfam	ABC transporter	469	600	IPR003439	GO:0005524
	Lja3g2564	667	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	452	665	IPR003439	GO:0005524
	Lja3g2564	667	MobiDBLite	consensus disorder prediction	69	83	-	-
	Lja3g2564	667	Gene3D	-	107	396	IPR027417	-
	Lja3g2564	667	Gene3D	-	415	666	IPR027417	-
	Lja3g2564	667	CDD	ABCF_EF-3	453	642	-	-
	Lja3g2564	667	Coils	Coil	378	398	-	-
	Lja3g2564	667	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	432	652	IPR027417	-
	Lja3g2564	667	CDD	ABCF_EF-3	144	359	-	-
	Lja3g2564	667	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	143	381	IPR027417	-
	Lja3g2564	667	SMART	AAA_5	168	358	IPR003593	-
	Lja3g2564	667	SMART	AAA_5	478	642	IPR003593	-
	Lja3g2564	667	ProSitePatterns	ABC transporters family signature.	286	300	IPR017871	GO:0005524
	Lja3g2564	667	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	144	389	IPR003439	GO:0005524
	Lja3g2564	667	PANTHER	-	4	667	-	-
	Lja3g2564	667	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	4	667	-	-
	Lja3g2564	667	MobiDBLite	consensus disorder prediction	38	52	-	-
	Lja3g2564	667	MobiDBLite	consensus disorder prediction	1	93	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g2564	Lja-Chr3	34164549	34166701	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g2564	451	607	Calmodulin-binding Proteins	AT2G36910	29.282	1.23e-10	63.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g2564	K06184		-	gmx:100806865	1080.86