Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2564 ATGGGAAAGAAAAAGACGGACGATGCAGGCCAGTCTACGAAGGCCAAAGCTAGTAGCAAAGATGCTCCTAAGAAAGAAAAAATTTATGTCGCTGTCATGTTGGCCAGTATGGATGAAAAGCCTGATAAAGCAGAAAAAGTAGCTTCTTCCTCCAATAAGCCCAAGCCAAAACCGAAAGCTTCTACTTACACTGATGGTATTGATCTTCCTCCCTCTGATGATGATGATGACGATCTATCTGAAGATGAGTCCAAACAGTCCATACCTGATTTCAAGCCACTTGAAGTGTCTGTTAAAGACAAAGAGTTGACAAAACGTGAGAAGAAAGATATTTTGGCTGCCCATGTTGTTGAGCAGGCAAAGAAGGAAGCTCTTAGGGATGATCATGATGCTTTTACTGTTAATGATGTTGATGCTAATGTTAAAGATATAACGGTGGAAAATTTTTCTGTGTCTGCTCGAGGTAAGGAACTTCTGAAAAATACATCGGTGAAGATATCTCATGGGAAGCGATATGGTTTGGTTGGGCCCAATGGAATAGGCAAGTCCACACTACTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAAAATATCGATGTCCTTCTGGTTGAGCAGGAGATAGTTGGGGATGATAAAATAGCACTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTGTTAATGTTCGACAAGAAGTTGCTGCTCTCACAAATGCAGCTTCTGTTGAGGAAATAGCAGAGCTGTATGAAAAATTGCAGCTGATGGGGTCTGATGCTGCTGAATCTCAAGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGCGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTATTACTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGTTGGAAAAAAACTTTGGTGGTTGTCTCTCATGATAGGGATTTCCTGAATACAGTATGCATTGAGATTATTCATCTCCATGATTTGAAGCTTCATCTCTATCGTGGAAACTTTGATGATTTTGAGAGTGGGTATGAACAACGTCGTAAAGAGATTAATAAGAAGTATGAGATTTATGACAAGAAAATGAAAGCAGCTAAAAGGAGTGGAAACCGGGCTCAACAAGAAAAGGTGAAGGATCGAGCTAAGTTTGCCACAGCTAAGGAAGCATCTAAATACAAGGGTAAGGGCAAGGGCAAGGTTAATGAGGATGAGATCACACTAAAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTATGCAGCTTATTGAAGTGAGCTTCACCTACCCAAACCGAGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACATTGCTAAATCTTCTGGCTGGTGATTTGGTTCCATCTGAAGGTGAAGTTCAAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACTTTCTGACAATGGATGAAACTCCTATGCAGTACCTTCTCCGTCTCCACCCAGACCAGGAGGGACTTAGCAAGCAAGAGGCTGTTCGTGCAAAGATTGGTAAGTTTGGGCTGCCTAGTCATAACCATCTTACCCCTATTGTGAAACTATCAGGAGGGCAAAAAGCTCGGGTGGTCTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTTATTGATGCATTGGCTGATGCATTGGATGAATTCACTGGAGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCATGTGTTTGTGACGATGAAGAAAGGAGTCAAATATGGATTGTTGAGGATGGCACTGTCAGAAATTTCCCTGGAACATTTGAGGATTACAAGGATGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTAA 2004 0.4187 MGKKKTDDAGQSTKAKASSKDAPKKEKIYVAVMLASMDEKPDKAEKVASSSNKPKPKPKASTYTDGIDLPPSDDDDDDLSEDESKQSIPDFKPLEVSVKDKELTKREKKDILAAHVVEQAKKEALRDDHDAFTVNDVDANVKDITVENFSVSARGKELLKNTSVKISHGKRYGLVGPNGIGKSTLLKLLAWRKIPVPKNIDVLLVEQEIVGDDKIALEAVVSANVELVNVRQEVAALTNAASVEEIAELYEKLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCIEIIHLHDLKLHLYRGNFDDFESGYEQRRKEINKKYEIYDKKMKAAKRSGNRAQQEKVKDRAKFATAKEASKYKGKGKGKVNEDEITLKFHFPEPTELTPPLMQLIEVSFTYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVQRSQKLRIGRYSQHFVDFLTMDETPMQYLLRLHPDQEGLSKQEAVRAKIGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILFIDALADALDEFTGGVVLVSHDSRLISCVCDDEERSQIWIVEDGTVRNFPGTFEDYKDDLLKEIKAEVDD* 668
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2564 667 Pfam ABC transporter 159 314 IPR003439 GO:0005524
Lja3g2564 667 Pfam ABC transporter 469 600 IPR003439 GO:0005524
Lja3g2564 667 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 452 665 IPR003439 GO:0005524
Lja3g2564 667 MobiDBLite consensus disorder prediction 69 83 - -
Lja3g2564 667 Gene3D - 107 396 IPR027417 -
Lja3g2564 667 Gene3D - 415 666 IPR027417 -
Lja3g2564 667 CDD ABCF_EF-3 453 642 - -
Lja3g2564 667 Coils Coil 378 398 - -
Lja3g2564 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 652 IPR027417 -
Lja3g2564 667 CDD ABCF_EF-3 144 359 - -
Lja3g2564 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 381 IPR027417 -
Lja3g2564 667 SMART AAA_5 168 358 IPR003593 -
Lja3g2564 667 SMART AAA_5 478 642 IPR003593 -
Lja3g2564 667 ProSitePatterns ABC transporters family signature. 286 300 IPR017871 GO:0005524
Lja3g2564 667 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 144 389 IPR003439 GO:0005524
Lja3g2564 667 PANTHER - 4 667 - -
Lja3g2564 667 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 4 667 - -
Lja3g2564 667 MobiDBLite consensus disorder prediction 38 52 - -
Lja3g2564 667 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g2564 Lja-Chr3 34164549 34166701 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2564 451 607 Calmodulin-binding Proteins AT2G36910 29.282 1.23e-10 63.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2564 K06184 - gmx:100806865 1080.86