Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2555 ATGGGATATGATCAAACCAGAAAGCTCTCTGATGAGTATGAGATTTCAGAGATTCTAGGAAGAGGTGGATTCTCTGTTGTCAGAAAAGGAACCAAAAAATCAGGCAATGAGAAAACCCAAGTAGCCATCAAAACACTCAGAAGGTTAGGTAGTTCTCCCTCTGGGACAGGTGGTGGACAGAAGAGCACAGCAACTGTGATGGGGTTCCCTTCTTTGAGACAGGTTTCAGTCTCAGATGCTTTGCTCACCAATGAGATTCTTGTGATGAGGAGGATAGTGGAAAACGTTTCGCCACATCCAAACGTGATTGATCTCTATGATGTGTGTGAGGACTCAAATGGGGTGCATCTTGTGCTGGAGCTTTGTTCTGGTGGGGAGCTGTTTGATAGGATTGTTGCACAGGATAAGTATGCTGAGACGGAAGCTGCCGCGGTGGTTTGCCAGATTGCGGCGGGGCTAGAGGCGGTTCACAAGGCTGACATTGTTCACAGGGATTTGAAGCCTGAGAATTGCCTTTTCTTGGATTCCAGGAAGGACTCTCCTCTCAAGATCATGGACTTTGGGTTGAGCTCTGTTGAGGAGTTCACTGACCCTGTTGTTGGGTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATCACTGCCAAGAGTGACATGTGGTCTCTGGGAGTGATTCTATATATCTTGCTCTCTGGGTATCCGCCTTTCATTGCACAAAATAATCGCCAAAAACAACAAATGATAATCAATGGGAATTTCAGTTTCTATGAGAAGACTTGGAAGGGCATTACCCAATCAGCGAAGCAATTGATTTCAAGTCTTTTGACTGTTGATCCAAGTAAGAGGCCTAGTGCTCAAGAGCTCTTGAGTCATCCATGGGTCAGAGGTGACAAAGCCAAAGATGAGCAAATGGACCCTGAGATTGTCTCAAGGCTGCAGAGCTTTAATGCAAGACGCAAACTCCGCGCAGCTGCAATTGCTAGTGTTTGGAGCAGCACAATCTTCCTGAGAACCAAAAAGCTGAGATCCTTGGTAGGAACTTATGATCTCAAAGAAGAGGAAATTGAAAGTCTCAGGATACACTTTAAGAAGATATGTGGAAATGGAGACAATGCAACTCTGTCTGAGTTTGTGGAGGTGCTGAAAGCAATGAAGATGCCCTCATTGATCCCTCTAGCACCGCGTATATTTGACTTGTTTGACAACAACCGTGATGGAACAATTGACATGAGAGAGATACTATGTGGGTTTTCTAGCCTCAAGAACTCCAAAGGAGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACAGATAGATCAGGGTGCATCACCAAGGAAGAAGTAGCATCCATGCTCTGTGCTTTGCCAGAGGAATGTCTTCCAGCTGATATCACTGAACCTGGGAAATTGGATGAGATATTTGACTTAATGGATGCCAACAGTGATGGAAAAGTTACATTTGAAGAATTCAAAGCTGCTATGCAGAGAGATAGCTCTCTCCAAGACATGCTCCTCTCTTCTCTTCGTCCATCATAG 1557 0.4489 MGYDQTRKLSDEYEISEILGRGGFSVVRKGTKKSGNEKTQVAIKTLRRLGSSPSGTGGGQKSTATVMGFPSLRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVCEDSNGVHLVLELCSGGELFDRIVAQDKYAETEAAAVVCQIAAGLEAVHKADIVHRDLKPENCLFLDSRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITAKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMIINGNFSFYEKTWKGITQSAKQLISSLLTVDPSKRPSAQELLSHPWVRGDKAKDEQMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLRSLVGTYDLKEEEIESLRIHFKKICGNGDNATLSEFVEVLKAMKMPSLIPLAPRIFDLFDNNRDGTIDMREILCGFSSLKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLCALPEECLPADITEPGKLDEIFDLMDANSDGKVTFEEFKAAMQRDSSLQDMLLSSLRPS* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2555 518 Gene3D - 344 513 - -
Lja3g2555 518 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Lja3g2555 518 Gene3D Phosphorylase Kinase; domain 1 6 128 - -
Lja3g2555 518 ProSiteProfiles Protein kinase domain profile. 13 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2555 518 CDD EFh 401 459 IPR002048 GO:0005509
Lja3g2555 518 Pfam EF-hand domain pair 433 502 IPR002048 GO:0005509
Lja3g2555 518 PRINTS Recoverin family signature 356 375 - -
Lja3g2555 518 PRINTS Recoverin family signature 426 445 - -
Lja3g2555 518 PRINTS Recoverin family signature 402 423 - -
Lja3g2555 518 PRINTS Recoverin family signature 492 512 - -
Lja3g2555 518 SUPERFAMILY Protein kinase-like (PK-like) 5 321 IPR011009 -
Lja3g2555 518 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Lja3g2555 518 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Lja3g2555 518 Pfam Protein kinase domain 13 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2555 518 CDD STKc_CAMK 13 299 - -
Lja3g2555 518 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Lja3g2555 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Lja3g2555 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 502 - -
Lja3g2555 518 SUPERFAMILY EF-hand 344 511 IPR011992 -
Lja3g2555 518 Pfam EF hand 403 418 IPR002048 GO:0005509
Lja3g2555 518 Gene3D Transferase(Phosphotransferase) domain 1 129 343 - -
Lja3g2555 518 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 13 502 - -
Lja3g2555 518 SMART efh_1 398 426 IPR002048 GO:0005509
Lja3g2555 518 SMART efh_1 434 462 IPR002048 GO:0005509
Lja3g2555 518 SMART efh_1 476 504 IPR002048 GO:0005509
Lja3g2555 518 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Lja3g2555 518 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Lja3g2555 518 ProSitePatterns Protein kinases ATP-binding region signature. 19 44 IPR017441 GO:0005524
Lja3g2555 518 CDD EFh 435 502 IPR002048 GO:0005509
Lja3g2555 518 SMART serkin_6 13 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2555 Lja-Chr3 33143721 33149693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2555 81 505 EF-hand Containing Proteins AT3G10660 37.300 7.72e-77 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Lja3g2555 Pkinase 6.8e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2555 K13412 - gmx:100780887 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2555 3 33143721 33149693 Lja3g2555 3 33143721 33149693 ECH