Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2548 ATGTCAACCCCACCAATGTCCTTCTTTCCCTTCCTTCTCTCCCTCTTCCTCCTCTTACCCTTACTCTTAGCTCAAGCTCCATCACCGCCTCCAACACAAGCTCCTCTTCCTCCTCCTTCTTCCTCTCCATCACCATCTCCAACACAAGCTCCTCTTCCTCCTCCTTTTTCCTCTCCATCACCATCTCCAATACAAGCTCCTCCTCCTCCTCCTCCTTCTTCAACTCCATCACCATCTCCAACACAAGCTCCTCCTCCTCCTCCTTCTTCCTCTGAAGCATGCAAATCCACACTCTACCCAAAACTCTGCCGTTCCATCCTCTCCTCCATTCGCTCTTCCCCATCCGACCCTTACCACCTAGGCAAATTCTCCATAAAACAAAGCCACAAACAAGCCAAGAAACTCTCCAAAGTCTTCAACGACTTCCTGACAAAGCACCACGACTCTTCCTCCCTCAACCAGGCTGAGCTCGGCGCACTGGACGACTGCGGCGAGCTCAACAACCTCAACGTGGACTTTCTGAAGAAAGTCTCCGACGAGCTGAAAGACTCCACTGAGGCTTCCAGCGTCGACGAGGTGGTGGAAGATGTCGAGACGTATCTGAGTGCGGTGGCCACAAACCACTACACTTGCTATGATGGGTTGGTGGCGATCAAGAGTAAGTTTGCTGATGCTCTTGCGGTGCCTCTCAGGGATCTGACGAAGCTTTACAGTGTGTCGCTTGGGTTGGTTTCACAGGCTGTGAGGAAAAACCAGAAGAAGCATAAGACGCGTAAACATGGGCTTCCCACCAAGAATTTCAAAGTGAGGCAGCCACTTGAAAAGCTTATTAAGCTTCTTCACACAAAGTATAGTTGCAATAACTCATCCAATTGTGCTAGAAGTGAAAGGATTCTTAAAGAAAGTGAAAGCAGAGGAGTTCTGCTACACAACTTTGTGGTCGTTAGCCATGATGGCACAGACAACTTCACTTCCGTTGGAGACGCTATTGATGCAGCACCCAAGCATTTGAAGCCTGAAGATGGCTATTTTCTCATCTATGTCAAAGAAGGAAACTATGAGGAGTATGTAGCTGTTCCCAAAGAAAAGAAGAATATCTTGCTTATTGGTGACGGAATCAACAAGACTTGCATCACAGGAAATCACAGTGTCAAAGATGGTTGGACAACTTTCAATTCTTCAACCTTTTCTGTCTCCGGAGAAAGATTTATTGCAGTGGATGTCACATTCAGAAACACAGCAGGCCCTCAGAAGCACCAAGCAGTAGCAGTGAGGAACAATGCAGACCTGTCCACATTCTACCGTTGCAGCTTTGAGGGCTACCAAGACACTCTCTATGTCCACTCCCTCAGGCAATTCTACAGAGAATGTGACATCTACGGAACCGTCGATTTCATCTTTGGCAATGCTGCAGTGGTCTTCCAGAGCTGCAACATCTATGCCAGGAAACCAATGCCAAACCAGAAGAACGCCATCACGGCACAAGGCAGAACTGATCCCAACCAAAACACTGGAATTTCAATACAGAATTGCAGGATTGATGCTGCACCAGACTTGGCTGCAGCTTTGAATTCCACTAAGAATTTCTTAGGCAGGCCATGGAAAGTGTATTCCAGGACTGTGTTTTTGCAGTCATACATTGGTGATTTGATTTATCCTGCTGGATGGTTAGAGTGGAATGGCACTGTTGGGTTAGACACACTCTTTTATGGCGAGTTCAACAACAATGGACCTGGTGCTGATACCAACAATAGGGTAAAATGGCAGGGTTACAGTCTCTTGAATGCTACTCAAGCTTTGAACTTCACTGTCCTTAATTTTACCTTGGGGGGTACATGGCTTCCTGAGACAGATATACCCTACACTGGAGGACTTGATGACTGA 1884 0.4724 MSTPPMSFFPFLLSLFLLLPLLLAQAPSPPPTQAPLPPPSSSPSPSPTQAPLPPPFSSPSPSPIQAPPPPPPSSTPSPSPTQAPPPPPSSSEACKSTLYPKLCRSILSSIRSSPSDPYHLGKFSIKQSHKQAKKLSKVFNDFLTKHHDSSSLNQAELGALDDCGELNNLNVDFLKKVSDELKDSTEASSVDEVVEDVETYLSAVATNHYTCYDGLVAIKSKFADALAVPLRDLTKLYSVSLGLVSQAVRKNQKKHKTRKHGLPTKNFKVRQPLEKLIKLLHTKYSCNNSSNCARSERILKESESRGVLLHNFVVVSHDGTDNFTSVGDAIDAAPKHLKPEDGYFLIYVKEGNYEEYVAVPKEKKNILLIGDGINKTCITGNHSVKDGWTTFNSSTFSVSGERFIAVDVTFRNTAGPQKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPMPNQKNAITAQGRTDPNQNTGISIQNCRIDAAPDLAAALNSTKNFLGRPWKVYSRTVFLQSYIGDLIYPAGWLEWNGTVGLDTLFYGEFNNNGPGADTNNRVKWQGYSLLNATQALNFTVLNFTLGGTWLPETDIPYTGGLDD* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2548 627 Gene3D - 309 625 IPR012334 -
Lja3g2548 627 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 92 246 IPR035513 -
Lja3g2548 627 PANTHER PECTINESTERASE 84 625 - -
Lja3g2548 627 PANTHER PECTINESTERASE 84 625 - -
Lja3g2548 627 Pfam Pectinesterase 313 608 IPR000070 GO:0030599|GO:0042545
Lja3g2548 627 SUPERFAMILY Pectin lyase-like 310 624 IPR011050 -
Lja3g2548 627 CDD PMEI-like_3 93 245 - -
Lja3g2548 627 Gene3D Invertase/pectin methylesterase inhibitor family protein 91 247 IPR035513 -
Lja3g2548 627 TIGRFAM PME_inhib: pectinesterase inhibitor domain 92 245 IPR006501 GO:0004857
Lja3g2548 627 MobiDBLite consensus disorder prediction 26 91 - -
Lja3g2548 627 ProSitePatterns Pectinesterase signature 2. 459 468 IPR033131 -
Lja3g2548 627 SMART PMEI_2 85 243 IPR006501 GO:0004857
Lja3g2548 627 MobiDBLite consensus disorder prediction 26 94 - -
Lja3g2548 627 Pfam Plant invertase/pectin methylesterase inhibitor 92 242 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2548 Lja-Chr3 32955278 32961335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2548 6 625 Carbohydrate Esterase AT3G10720 57.760 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2548 K01051 - gmx:100808277 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2548 3 32955278 32961335 Lja3g2548 3 32955278 32961335 ECH