Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2547 ATGTCTTCCTATGGCAAACTCGATGAAGCAGAACAAGCCATGCTCGTGGTTCGCCGCAGAACCCGAAAGCGAGTCACCATCATAAGCCTGTCCACAATACTCCTCATCGGTGTTGTGTGTGGTGCTGTGTTTGGAACCGTTGCTCATAGAAATGACAATGATGACAATGACAATAGCTCAAACGGTAACAACAATGCTCAATCGCTTGCAAGTTCGGTGAAGGCGGTTTGTGATGTGACATTGTACAAGGATGCATGTTACAATACCCTTGGTCCTCTTGTGCGGTCAGGTAAGGTTCAACCTGGGGAGCTGTTCATGTTGTCCATCAATGTGGCCTTAACTGAGGTTTCTAGGGCTGCTAAGGGTTTCTCTGAGCAGGGTGGTTTTGAGGGGTTGAATGTTGATAACAGGACTAAGGAGGCTTTGAAGAATTGCAAGGAGCTTCTGGGTTTAGCGGTTGATCATCTGAATAGCTCTTTGTCTTCTGGGGGGAAGTCTTCACTGCTTGATGTTTTGGAGGATCTTAAAACTTGGTTGAGTGCTGCAGGTACTTACCAGCAGACTTGCATTGATGGCTTTGGTGAAGCCTCATTGCAAACCAGTGATGTGAGCAATCTCAAAAATTCAACAGAGCTCACCAGTAACAGCCTTGCCATCATCAATTGGCTTAACAAGGCCGCAAGCGCAGTGAACTTGAGGCGGCGCTTGATGAGTTTCCCCAATCACCACGATGAACAACCAAAGTGGCTTCAATCTAAAGACCGGAAGCTGCTTCAAGCAGATGATTTAAAGAAGAAAGCTGACATTGTTGTGGCCAAAGATGGGAGTGGAAAATACAAAACAATTTCTGCAGCACTCAAACATGTCCCTGAAAAGAGTGACAATAGGACTGTAATCTACGTGAAGAAGGGGATTTATTATGAAAATGTCAGGGTGGAGAAGACTAAATGGAATGTCATGATCATTGGTGATGGTATGAATGCTACAGTTGTATCTGCAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCATCTGCAACATTTGCTGTGTTTGGGAAGAATTTCATTGCAAGGGACATGGGCTTTCGGAACACAGCTGGTGCAGCGAAGCACCAAGCAGTGGCACTAATGACAAGTGCTGATTTAGCAGTTTTCTATAGATGTCAAATTGATGCATATCAGGACACTCTTTATGTTCATTCCAATCGCCAATTCTACAGGGAATGCAACATCTACGGAACAGTTGACTTCATTTTTGGCAACTCTGCAGCTGTCTTACAAAACTGCAACATTTTGCCAAAGCTCCCAATGCAGGGTCAGCAGAACACAATCACAGCGCAGGGAAAAACTGACCCTAACATGAACACAGGGATTTCAATTCAGAATTGCAGCATTTCGCCATTTGGGAACTTGAGTTATGTCCAAACATACCTGGGAAGACCCTGGAAGAATTACTCAACCACTGTAGTTATGCAATCCACGTTGGGCAGCTTCATTAGTCCAAATGGATGGTTACCATGGGTGGGGAACTCAGCACCAGACACCATATTCTATGCTGAATATCAGAATGTTGGACAAGGTGCTTCAACAAAGAATAGGGTTAAATGGAAGGGTTTGAAAACCATTACCAGTAAACAAGCTAGCAAGTTTACAGTCAAGTCCTTTCTTTCAGGGGATAAATGGATCCCATCTTCTGGTACCCCCTTTAAGTCTTCTATGTGA 1725 0.4441 MSSYGKLDEAEQAMLVVRRRTRKRVTIISLSTILLIGVVCGAVFGTVAHRNDNDDNDNSSNGNNNAQSLASSVKAVCDVTLYKDACYNTLGPLVRSGKVQPGELFMLSINVALTEVSRAAKGFSEQGGFEGLNVDNRTKEALKNCKELLGLAVDHLNSSLSSGGKSSLLDVLEDLKTWLSAAGTYQQTCIDGFGEASLQTSDVSNLKNSTELTSNSLAIINWLNKAASAVNLRRRLMSFPNHHDEQPKWLQSKDRKLLQADDLKKKADIVVAKDGSGKYKTISAALKHVPEKSDNRTVIYVKKGIYYENVRVEKTKWNVMIIGDGMNATVVSASLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGAAKHQAVALMTSADLAVFYRCQIDAYQDTLYVHSNRQFYRECNIYGTVDFIFGNSAAVLQNCNILPKLPMQGQQNTITAQGKTDPNMNTGISIQNCSISPFGNLSYVQTYLGRPWKNYSTTVVMQSTLGSFISPNGWLPWVGNSAPDTIFYAEYQNVGQGASTKNRVKWKGLKTITSKQASKFTVKSFLSGDKWIPSSGTPFKSSM* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2547 574 CDD PMEI-like_3 75 225 - -
Lja3g2547 574 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Lja3g2547 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 225 IPR035513 -
Lja3g2547 574 Gene3D - 263 574 IPR012334 -
Lja3g2547 574 SMART PMEI_2 68 219 IPR006501 GO:0004857
Lja3g2547 574 PANTHER PECTINESTERASE 4 572 - -
Lja3g2547 574 Pfam Plant invertase/pectin methylesterase inhibitor 72 219 IPR006501 GO:0004857
Lja3g2547 574 Pfam Pectinesterase 268 560 IPR000070 GO:0030599|GO:0042545
Lja3g2547 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 223 IPR035513 -
Lja3g2547 574 PANTHER PECTINESTERASE 4 572 - -
Lja3g2547 574 SUPERFAMILY Pectin lyase-like 266 571 IPR011050 -
Lja3g2547 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 69 223 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2547 Lja-Chr3 32937644 32954778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2547 2 574 Carbohydrate Esterase AT3G10710 57.217 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2547 - - gmx:100808802 889.797