Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2535 ATGGAACAAGGGTGGTACCAAAACCCAGAAACTGCTTCAGGTTCAGTTGACAAATCTAAGATTGTAGAAGTGAAACCTCTGCGTAGTTTAGCTCCTGTGTTCCCAAAATCTATTCAAGCTTTATTCTCTAGCCGGTACCCATCTGGGTTTCCTCCATTTGTTTCATTAGAGGAGCCTGAAGAGCCACAAGCACCTCCTATCCCTAACCCAACTCCAATAAGGTCCTATAGGAGTTCAGGAGTTGAAGAAACAAACTCAGATGGAGCGGGAGCGAATGGAACCACTTCAAATGTGGAGGGATTAAATGATGAATGTGCTGCTGATAACCAAAAGCCTGCAGCCAAAAAATTGCGCAAGGGTGAATCATCGCAAAAGAAGAAGAAGAAAACTCAGGAGTCACAGGCTGATCATCCAAGTCATTTGATTGGTCTTAGCCTAGCCCAGAAAGATGATGGTGATCGCGAGGCAGTTAATCATGTGCTCATGACATTTGATTCAATTAGAAGAAGGCTCTGCCAACTTGAAGATGCCAAAGAGTTGAACACAGCAAATGCAATCAAGCGTGCGGATTTAAGAGCAAGCAATGCTTTGACGTGCAAAGGGGTTCGAACAAACTTGAAGAAGAGGGTAGGACTGGTGCCCGGGGTTGAGATTGGGGACATTTTCTTTTGGCGAATGGAAATGGTTCTTGTGGGTTTACATAGTCAAACAATGGGTGGAATTGACTACATAACTATTAAGGATGAGTTGCAAGAGGAGCCTGTGGCTATAAGCATTGTTTCATCAGGAGTATATGATGATGATACAGAGGATAATGATATTTTAATTTATAGTGGTCAGGGTGAGAATTTCAACAAGAAAGATAAGCACGCGACTGATCAGAAGCTTCAAAGGGGTAATCTTGCTCTGGATAAAACTTCAAGACGACGCAATGAAGTTAGAGTTATCCGGGGCTTGAGAGATCCTGTGAACAAAAATACAAAAATCTATGTGTATGATGGTCTGTATAAAATTGAGGATTCTTGGATCGAAAAAGGAAAATCTGGGGGTGGTGGTGGTATATTTAAATATAAGTTTGTGAGATTGCCTGGACAACCCAGTGCTTTTGCTGTTTGGAAATCGATTCAAAAGTGGAAGGAAGGCTTCCCTTCACATTCAAGGAATGGCCTTATTCTTGCAGACCTCTCCACAGGAGCTGAGAGTATTCCAGTATCACTTGTCAATGATGTTGATGGCGAGAAGGGACCGTCTTTTTTCACTTATTTCCATTCTCTTAGACAACCAAAACCTTTCAGTTCTGTGCAGTCTTCATATGGCTGCAACTGTAACAAAGCATGTGTCCCAGGTGATTTGAACTGCTCTTGCATTCGAAGAAATGAAGGTGATTTTCCATATACAGCAAATAGTATTCTAGTGAGTCGGAAGCAATTTGTTCATGAATGTGGCCCTATGTGCCGGTGTCTTCCTAGCTGCAAAAATCGAGTATCTCAATCTGGTTTAAAGCACCACATGGAAGTGTTCAAAACAAGGGATAGGGGGTGGGGGCTTCGATCACTGGATCCTATACGTGCTGGTACCTATATTTGTGAGTATGCAGGGGAAGTTATTGACAGAGCTGTGGAAAGAGATAATGAAGAGTATATCTTTGATACAAGCCGTATTTATGAATCGTTCAAGTGGAATTATGAACCTAGCTTACTGGAAGGCGTAAGTTCAAATGTATCTAGTGAAGATTATGATATACCATCTCCTATGATTATAAGTGCCAAGAATGTTGGAAATGTGGCCAGATTCATGAACCATAGTTGCTCCCCAAATATTTTCTGGCAGCCAGTCTTATATGCAGAAAAAAATCAATACTTTCTTCACATTGCATTTTTTGCTCTTAGACACATTCCTCCAATGACAGAGTTAACATATGATTATGGCATTGCCCGATCTGGTCATGCTAACGGGAGCAGTGCGTCCAAAGGGAGAAAGATATGCTTGTGTGGATCATCAAAATGCCGTGGTTCATTTGGTTGA 2025 0.4178 MEQGWYQNPETASGSVDKSKIVEVKPLRSLAPVFPKSIQALFSSRYPSGFPPFVSLEEPEEPQAPPIPNPTPIRSYRSSGVEETNSDGAGANGTTSNVEGLNDECAADNQKPAAKKLRKGESSQKKKKKTQESQADHPSHLIGLSLAQKDDGDREAVNHVLMTFDSIRRRLCQLEDAKELNTANAIKRADLRASNALTCKGVRTNLKKRVGLVPGVEIGDIFFWRMEMVLVGLHSQTMGGIDYITIKDELQEEPVAISIVSSGVYDDDTEDNDILIYSGQGENFNKKDKHATDQKLQRGNLALDKTSRRRNEVRVIRGLRDPVNKNTKIYVYDGLYKIEDSWIEKGKSGGGGGIFKYKFVRLPGQPSAFAVWKSIQKWKEGFPSHSRNGLILADLSTGAESIPVSLVNDVDGEKGPSFFTYFHSLRQPKPFSSVQSSYGCNCNKACVPGDLNCSCIRRNEGDFPYTANSILVSRKQFVHECGPMCRCLPSCKNRVSQSGLKHHMEVFKTRDRGWGLRSLDPIRAGTYICEYAGEVIDRAVERDNEEYIFDTSRIYESFKWNYEPSLLEGVSSNVSSEDYDIPSPMIISAKNVGNVARFMNHSCSPNIFWQPVLYAEKNQYFLHIAFFALRHIPPMTELTYDYGIARSGHANGSSASKGRKICLCGSSKCRGSFG* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2535 674 ProSiteProfiles SET domain profile. 502 643 IPR001214 GO:0005515
Lja3g2535 674 Gene3D SET domain 384 673 IPR046341 -
Lja3g2535 674 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 674 IPR025794 GO:0016571
Lja3g2535 674 SUPERFAMILY PUA domain-like 194 382 IPR015947 -
Lja3g2535 674 MobiDBLite consensus disorder prediction 73 103 - -
Lja3g2535 674 ProSiteProfiles Post-SET domain profile. 658 674 IPR003616 -
Lja3g2535 674 Gene3D - 193 381 IPR036987 -
Lja3g2535 674 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 672 - -
Lja3g2535 674 SMART set_7 502 649 IPR001214 GO:0005515
Lja3g2535 674 Pfam Pre-SET motif 396 494 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja3g2535 674 MobiDBLite consensus disorder prediction 58 72 - -
Lja3g2535 674 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 672 - -
Lja3g2535 674 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g2535 674 MobiDBLite consensus disorder prediction 1 15 - -
Lja3g2535 674 SMART G9a_1 206 365 IPR003105 -
Lja3g2535 674 ProSiteProfiles YDG domain profile. 211 361 IPR003105 -
Lja3g2535 674 Pfam SAD/SRA domain 210 365 IPR003105 -
Lja3g2535 674 SUPERFAMILY SET domain 401 671 IPR046341 -
Lja3g2535 674 Pfam SET domain 513 643 IPR001214 GO:0005515
Lja3g2535 674 ProSiteProfiles Pre-SET domain profile. 438 499 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja3g2535 674 SMART preset_2 392 486 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja3g2535 674 MobiDBLite consensus disorder prediction 49 141 - -
Lja3g2535 674 MobiDBLite consensus disorder prediction 109 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2535 Lja-Chr3 32660345 32662933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2535 17 674 Su(var)3-9 homologs AT1G73100 50.875 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja3g2535 SAD_SRA 3.7e-44 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2535 K24405 - gmx:100800651 997.653