Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2530 ATGGACAACATGAATAACAAACCATGTTTCTTCTGGCTTTCTCTTCTCATCTTCTGCTTCTTCCTTCACTTCCACGCCTCCCTTGCTGCTTTGACCACCATCTCAGCAAATCAATCTCTTTCTGGTGATCAAACCCTTGTCTCCAAAGATGGGAACTTTGAACTGGGTTTCTTCAATCCAGGTAACTCCTCTAGATATTACATATCCATGTGGTACAAAAAGGTATCAACAAGAACATATGTTTGGGTAGCCAATAGAGATGACTCTGTTTCTGATAAGAACTCTTCCATTTTAACAATATATCATGGTAATTTAGTGCTCTTAGAGAATGGGAATCTAGTTTGGTCAACGAATTTGAACTCTCCTAGTCCTAGCTCAGGTTCTGTAGAAGCTGTGCTTCTAGATAATGGGAATCTGATATTACGCGACAAGCCTAATGCATCAGAATTAGAATCTCTATGGCAGAGTTTTGATCATCCAACAGATACATGGCTTCCCGGTGGCAGAATAAAACGGGACAACAAAACAAAGAAGCCTCAGTATCTGACTTCATGGAAGAACTCTGAAGATCCAGCAACAGGCCTATTCTCTTTGCAATTGGACCCCAATGGAACCACTTCATATATGATTCTATGGAACAAAACTGAACTGTATTGGACAAGTGGTGCTTGGAATGGACATATTTTCAGCTTGGTTCCTGAGATGAGGCTTAACTACATTTACAATTTGAGCTTTGTGTCGAATGAGAACGAGAGCTACTTCACCTACACCTTGTACAACAATTCCCAACTATCTCGTTTCGTGATGGATGTCACGGGGCAGATCAAGCAATTGACATGGCTGGAAGATTCTCAGGAATGGAACTTGTACTGGTCACAGCCAAGCCGCCAATGTGAGGTTTATGCTGTTTGTGGTGCATTTGGGAGCTGCTCTGAAAGCTCCATGCCATATTGTAATTGTGTAAATGGCTATGAGCCAAAGTCACAATCTAATTGGGATATGGGAGATTACTCAGATGGGTGTGTGAAATCAACAAAGTTTCAATGTGAGTCATCCAATTCCTCTAATGGTACCAATGACAGGTTTTTAACAATGCCCAACATGGCTTTGCCTGAACATGCAGAGCTTCTGGGAGCAGATAATGTTGGGGAATGTGAGTTAACTTGCTTTAGCAACTGTTCTTGCAAAGCTTATGCTTTTTACAGTACCGATACCGTGTGTTCATTATGGTATGGAGATTTTTTGAATTTGCGACAGCTTAATAAGGATGATAGTTCAGGGCAGACTCTGTTTCTCAAACTTGCAGCATCAGAGTTTCATGATGATGATCCTAAGAGCAGCAATGGGATAAGCATTGGTGTTATTGCTGGTGCTGTTGGTGGTGGTGTTGTGGTGATTCTCCTAGTTCTTGTTGTAATTGTCGTGCTGAGGCGAAAAAAGAGACCAGGGGCTGCAAGTAATATTTTCAGCAAGCATTACAAAAAGAACCTGAGGAAGGAAGTTGTTGACTTGCCAACATTTGATTTCTCAGTCTTAGCATATGCCACCAAAAACTTTTCAATCTATAACAAACTTGGAGAAGGTGGCTTTGGACCAGTATACAAGGGAATGTTGATAGATGGACAAGAGATAGCTGTGAAAAGGCTTTCAAAAAGATCTACACAAGGGTTGGAAGAATTTAAAAATGAAGTGGCACTGATTGCCAAACTTCAGCACCCTAATCTCATAAAGCTTCTTGGTTGTTGTATTCAAGGCGAAGAAACAATGCTGGTCTATGAATACATGCCCAATAAAAGCTTGGACTACTTTGTTTTTGATGAAACCAAAAAGATGTCATTGGATTGGCTTAAGCGTTTCAATATTATTGGTAGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGACTAAGGATTATTCACAGGGATCTCAAAACTAGCAATATATTACTAAATCGGAATTTGGAACCGAAAATATCAGACTTTGGCTTGGCACGAATATTTTTGGGAGACCAAATTGAGGCAAACACAAATAGAGTGGCTGGAACATATGGCTACATCTCTCCAGAATATGCTGTCCATGGGCATTTCTCAATGAAATCAGATGTCTTTAGTTATGGCGTGATTGTACTAGAAATTGTAAGTGGGAAAAAGAACAGGGGATTTTCAGACCCAGAACACTACAATAATCTTCTCGGATATGCATGGAGATTATGGACTGAAGAGAGAGAAGTGGAACTACTGGATGAAGTGTTACGGGAACAATACACACCATTTGAAGTCATACGAAGCATACAAGTCAGTCTATTATGCGTGCAACAAAGGCCTGAAGATAGACCAGACATGTCATCCGTGGTTCTAATGCTAAATGGTGAGAAACTATTGCCAAAGCCAAAGGTTCCTGGCTTTTATACTGAAAAAGATTTAAGTACTAAATCAGACTCTTCACTTGCAAATCACAAATTATGCTCCGCTAATGAAATATCCATCACAGAGTTAGATGCAAGATAG 2514 0.4021 MDNMNNKPCFFWLSLLIFCFFLHFHASLAALTTISANQSLSGDQTLVSKDGNFELGFFNPGNSSRYYISMWYKKVSTRTYVWVANRDDSVSDKNSSILTIYHGNLVLLENGNLVWSTNLNSPSPSSGSVEAVLLDNGNLILRDKPNASELESLWQSFDHPTDTWLPGGRIKRDNKTKKPQYLTSWKNSEDPATGLFSLQLDPNGTTSYMILWNKTELYWTSGAWNGHIFSLVPEMRLNYIYNLSFVSNENESYFTYTLYNNSQLSRFVMDVTGQIKQLTWLEDSQEWNLYWSQPSRQCEVYAVCGAFGSCSESSMPYCNCVNGYEPKSQSNWDMGDYSDGCVKSTKFQCESSNSSNGTNDRFLTMPNMALPEHAELLGADNVGECELTCFSNCSCKAYAFYSTDTVCSLWYGDFLNLRQLNKDDSSGQTLFLKLAASEFHDDDPKSSNGISIGVIAGAVGGGVVVILLVLVVIVVLRRKKRPGAASNIFSKHYKKNLRKEVVDLPTFDFSVLAYATKNFSIYNKLGEGGFGPVYKGMLIDGQEIAVKRLSKRSTQGLEEFKNEVALIAKLQHPNLIKLLGCCIQGEETMLVYEYMPNKSLDYFVFDETKKMSLDWLKRFNIIGSIARGLLYLHQDSRLRIIHRDLKTSNILLNRNLEPKISDFGLARIFLGDQIEANTNRVAGTYGYISPEYAVHGHFSMKSDVFSYGVIVLEIVSGKKNRGFSDPEHYNNLLGYAWRLWTEEREVELLDEVLREQYTPFEVIRSIQVSLLCVQQRPEDRPDMSSVVLMLNGEKLLPKPKVPGFYTEKDLSTKSDSSLANHKLCSANEISITELDAR* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2530 837 Pfam S-locus glycoprotein domain 219 328 IPR000858 GO:0048544
Lja3g2530 837 Pfam PAN-like domain 357 416 IPR003609 -
Lja3g2530 837 ProSiteProfiles Bulb-type lectin domain profile. 31 154 IPR001480 -
Lja3g2530 837 SMART ntp_6 357 434 IPR003609 -
Lja3g2530 837 SMART serkin_6 519 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2530 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Lja3g2530 837 Gene3D Transferase(Phosphotransferase) domain 1 595 797 - -
Lja3g2530 837 CDD B_lectin 37 160 IPR001480 -
Lja3g2530 837 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 9 801 - -
Lja3g2530 837 Pfam Protein tyrosine and serine/threonine kinase 521 788 IPR001245 GO:0004672|GO:0006468
Lja3g2530 837 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 9 801 - -
Lja3g2530 837 ProSiteProfiles PAN/Apple domain profile. 349 435 IPR003609 -
Lja3g2530 837 PIRSF SRK 3 837 IPR024171 GO:0004674
Lja3g2530 837 SMART blect_4 37 160 IPR001480 -
Lja3g2530 837 Pfam D-mannose binding lectin 79 186 IPR001480 -
Lja3g2530 837 SUPERFAMILY Protein kinase-like (PK-like) 503 790 IPR011009 -
Lja3g2530 837 SUPERFAMILY Hairpin loop containing domain-like 359 417 - -
Lja3g2530 837 Gene3D - 27 157 IPR036426 -
Lja3g2530 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 225 IPR036426 -
Lja3g2530 837 CDD PAN_AP_plant 354 435 - -
Lja3g2530 837 ProSiteProfiles Protein kinase domain profile. 519 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2530 837 CDD STKc_IRAK 525 792 - -
Lja3g2530 837 Gene3D Phosphorylase Kinase; domain 1 492 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2530 Lja-Chr3 32552678 32557387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2530 442 805 Receptor kinase-like Gene Family AT4G23190 51.467 4.46e-127 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g2530 PK_Tyr_Ser-Thr 8.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2530 - - lja:Lj0g3v0348039.1 1284.24