Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2529 ATGGCTTCTTCGTCCACCAATCGTCAATGGCTGTACGACGTGTTCATCAACTTCAGGGGAAAAGACACCCGTGGCAACTTCGTTTCTCATCTCCATGCCGCCCTTTCAAACGCCGGAGTCAACGCTTTCCTCGACGATGACAAGCTTCGAAGGGGAAACCAGCTTGGACCAGAACTGTTGCGAGCCATAGAAGGTTCTCAGATATCTATCGTGGTTCTGTCACAAAACTACGTTTACTCTAACTGGTGTCTTGATGAACTGGTCAAAATCATGGATTGCCGCACAATTATGGGGCAGGTTGTTCTGCCTGTGTTCTACAACGTCCAACCTTCGTTTCTTCGTGGTTATGCCGAGGAAACTTTTGATCTTGTCATGTCAAAGTCTGTTGATCATAAATGGAAAACAGCACTGATTGATACGGCAAGTATAGCTGGTTGGGATGTCAGAAATTGGCGAAACGAAAACGCTGTGGTGAAGGATATTGTTGATAAAGTTTTGAGAACTCTAGACAAAACATACTTGTCCATTACAGACTACCCAGTTGGATTAGAACCCCGTGTGCAGCATGTGATTCGAAATCTGAAAAAGCAAACAAGAGGAGTTTCTATAGTAGGGATTTGGGGCATGGGAGGGTGTGGTAAAAGCACCATAGCCAAACTCATCTATAATAAACTTCATCATGAATTTGAAGATGCAAGTTTCCTTGCAAATATTAGAGAAGTTTGGGAGAAAGATAGGGGTCAAATTGATTTGCAAGAACAGCTTCTTTCAGATATCCTTAAAACTAGAGAGATGAAGGTGCACAGCATTGAGTGGGGCAAAGCTACGATCAGGGAAAGACTTTCTGTAAAAAGAGCACTTGTTGTACTTGATGATGTGAATAAGTCTGAGCAATTAAATGCATTATGCGGAAATCGTAAAGGCATTGGTTCAGGAAGTGTAATAATCATTACAACAAGAGATATACGTCTACTCAAAGTCCTTGATGTTGACTACGTCTATGAAGTGGAGGGTTTGAATGTAATGGAGTCCCTTGAGCTTTTCAGTTGGCACTCATTTAGGGAAGCAACCCCAAGAGAAGGCTTCCTGAGTCTCTCAAAAAATGTAGTTGCTTACTGTGGTGGACTACCACTAGCTCTTGAAGTCATTGGATCTTATTTGTACATGAGGAGTACAAAAGAGTGGCAATGTGTATTATCAAAACTAACAAGAATACCGGATGATCAAATACAGGAGAAACTGAAAATAAGCTTTGACGGTTTAAGGGTTCATATGGAGAAGGATATATTTCTTGACATATGCTGCTTCTTTATCCACGAGGACATAGCTTATGTTACCGACATACTAAATGGTTGCGGTCTACATGCTGATATTGGAATTAAAGTTCTAGTAGAAAGGAGCCTCATAAAAATTGAAAGGAATAACAAGCTTGGAATGCATGATCTGCTTCGAGATATGGGAAGAGAGATTGTTCGTGACAGCTCAGAAAAGAAATTGGAGAAGCCTAGTCGACTGTGGTTTCATGAGGATGTGCTAGATGTATTAACAAAAAATACGGGGACAGAAGCTATTGAGGGATTGTCCTTGAAGTTGCCTGGAATCAGTAGATATTGCTTCAATGTTGATGTTTTTAAGGAAATGAAGAGATTAAGACTGTTGCAGGTTGATAATGTAAACCTCATAGGAGATTATGGAGATCTTTCTAAGCAGCTGAGATGGATCTCATGGAAAGGATTTTCTTTGAAATACATGCCTGACAAATTTTATCTGGAAAATGTAGTTGCAATTGACATTAAACACAGTAATCTTCAACAAGTATGGAAGGTACCTCAGTTGCTTGAGAAGCTAAAAATCCTCAATCTTAGTCATTCCAGGAACTTGATAAAAACCCCTGACTTTTCAAATCTACCAAATCTTGAAAAGCTCATTCTCGAAGATTGTTCAAGTTTGTGCAACATACACCAGTCCATTGGTGATCTCTGCAATCTTATTTTATTGAACTTGAAGGATTGTACCAATCTTAGCAATCTCCCAAGAGTGACATACAAGTTGAAATCTTTGAAAACTCTCATCATTTCGGGTTGTTCAAAAATTGACAAATTAGAAGAAGATATAGTGCAAATGGAATCCTTGACAACTCTAATTGCAGAAAATACTGCTGTGAAACAAGTGCCCTTTTCAATTGTAAGATCAAAAAGCATTGGATATATATCCCTGTGTGGCTATGAAGGATTAGCACATGATGTTTTTCCTTCGCTCATTTGGTCTTGGATGTCTCCAACAATGAAGCCCTTGTCCAGTACTCACCACCTATTTGGAGCCATGTCTCTAGTTTCCACTAATTTTCAGAATAATTGTTTGGAAGATTTGTCAGCAATGCTTAGCGGCCTTTCAAGTCTTCGAAGTGTCCAGGTGCAATGCAACACAGAGTTTCAACTATCTAAAGCATTACGTACTATTTTGGATGACATGTATGGTGTAAATCATACTGAATTCGAAATAATACCATATGTATCGCCAATCTCAAATGATTCTGTGAGGTCTTATTTGATTGGAATGGGAAGTTACCTAGAAGTCTTCAATACTCTCAGGAAGAGCATATCAGAGGTACTGACAACTAATGAGCCAGGTAATATTCCTCTGACGGGTGACAACAATCCTCATTGGTTGACCTATGCAGGTGAAGAAGGACATTCAGTGCTTTTCACTGTGCCTCAAGTTAGAAATTGTCACATAAAGGGAATGACTTTGTGTGTCATTTATTCATCAAATCCTGGAAACACAGCAGCTGAATGTCTTATTGGTGTCTTGATGGTTAATTACACAAAGTGTGTTGCTCACATGTACAAGCGAGACACAACAATCTCCTTTAATGATGATGATTGGCAAGGTATAGTGTCACATCTTGAATCGGGTGACAAAGTAGAGATTTTTGTCATTTTTGGGAATGGATTGGTAGTCAAGAAGACAGCTGCTTATCTGATATATGATGAATCAATTGACATGGAAATGAATCATGAATCAACTAACACCGAGCCTTCTCTGCAGCCAAGAAAAGAGGCAACGAAAAATGTGTTTTTAAGATTCATAAAGAAACTTGTAGGGTGTATGTAA 3114 0.3931 MASSSTNRQWLYDVFINFRGKDTRGNFVSHLHAALSNAGVNAFLDDDKLRRGNQLGPELLRAIEGSQISIVVLSQNYVYSNWCLDELVKIMDCRTIMGQVVLPVFYNVQPSFLRGYAEETFDLVMSKSVDHKWKTALIDTASIAGWDVRNWRNENAVVKDIVDKVLRTLDKTYLSITDYPVGLEPRVQHVIRNLKKQTRGVSIVGIWGMGGCGKSTIAKLIYNKLHHEFEDASFLANIREVWEKDRGQIDLQEQLLSDILKTREMKVHSIEWGKATIRERLSVKRALVVLDDVNKSEQLNALCGNRKGIGSGSVIIITTRDIRLLKVLDVDYVYEVEGLNVMESLELFSWHSFREATPREGFLSLSKNVVAYCGGLPLALEVIGSYLYMRSTKEWQCVLSKLTRIPDDQIQEKLKISFDGLRVHMEKDIFLDICCFFIHEDIAYVTDILNGCGLHADIGIKVLVERSLIKIERNNKLGMHDLLRDMGREIVRDSSEKKLEKPSRLWFHEDVLDVLTKNTGTEAIEGLSLKLPGISRYCFNVDVFKEMKRLRLLQVDNVNLIGDYGDLSKQLRWISWKGFSLKYMPDKFYLENVVAIDIKHSNLQQVWKVPQLLEKLKILNLSHSRNLIKTPDFSNLPNLEKLILEDCSSLCNIHQSIGDLCNLILLNLKDCTNLSNLPRVTYKLKSLKTLIISGCSKIDKLEEDIVQMESLTTLIAENTAVKQVPFSIVRSKSIGYISLCGYEGLAHDVFPSLIWSWMSPTMKPLSSTHHLFGAMSLVSTNFQNNCLEDLSAMLSGLSSLRSVQVQCNTEFQLSKALRTILDDMYGVNHTEFEIIPYVSPISNDSVRSYLIGMGSYLEVFNTLRKSISEVLTTNEPGNIPLTGDNNPHWLTYAGEEGHSVLFTVPQVRNCHIKGMTLCVIYSSNPGNTAAECLIGVLMVNYTKCVAHMYKRDTTISFNDDDWQGIVSHLESGDKVEIFVIFGNGLVVKKTAAYLIYDESIDMEMNHESTNTEPSLQPRKEATKNVFLRFIKKLVGCM* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2529 1037 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 996 - -
Lja3g2529 1037 Gene3D - 338 422 IPR042197 -
Lja3g2529 1037 SMART till_3 11 143 IPR000157 GO:0007165
Lja3g2529 1037 Pfam TIR domain 12 177 IPR000157 GO:0007165
Lja3g2529 1037 Gene3D - 174 332 IPR027417 -
Lja3g2529 1037 Pfam NB-ARC domain 186 406 IPR002182 GO:0043531
Lja3g2529 1037 Gene3D - 5 173 IPR035897 -
Lja3g2529 1037 SUPERFAMILY L domain-like 479 808 - -
Lja3g2529 1037 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 996 IPR044974 GO:0006952
Lja3g2529 1037 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 146 IPR035897 -
Lja3g2529 1037 PRINTS Disease resistance protein signature 203 218 - -
Lja3g2529 1037 PRINTS Disease resistance protein signature 373 387 - -
Lja3g2529 1037 PRINTS Disease resistance protein signature 280 294 - -
Lja3g2529 1037 PRINTS Disease resistance protein signature 611 627 - -
Lja3g2529 1037 Gene3D Ribonuclease Inhibitor 540 836 IPR032675 -
Lja3g2529 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 433 IPR027417 -
Lja3g2529 1037 ProSiteProfiles TIR domain profile. 10 169 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2529 Lja-Chr3 32548042 32553945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2529 12 728 WRKY Transcription Factor Family AT4G12020 30.488 5.49e-81 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2529 - - vra:106773318 1286.94