Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2500 ATGGCGTCTGCAGCAGCAGCAGGAGGAGGAGGAGCGAACACAGGTGTGGAGTGGCACGTGCGTCCTCCAAACCCTAAGAACCCAATCGTCTTCTTCGATGTCACCATCGGTAACATACCAGCTGGTAGAATCAAGATGGAGCTCTTCGCTGATCTTGCCCCCAAAACCGCTGAAAATTTCAGGCAGCTGTGCACAGGGGAGTACAGGAAAGCAGGACTGCCTGTTGGTTACAAAGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTAAAGGGTGATGGTAGCGGATGTGTTTCAATCTATGGACTCAAATTTGATGATGAAAATTTTGTTGCCAAACACACTGGCCCAGGTCTTCTCTCCATGGCAAATAGTGGACCTAATACTAATGGTTGTCAGTTCTTTATAACTTGTGCAAAGTGTGACTGGCTTGACAACAAGCATGTTGTTTTCGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTCAGGAAGATCGAGAATGTGGCAGCTGGACCCAATAACCGGCCAAAATTACCTTGTGTCATTGCTGAATGTGGTGAAATGTAG 588 0.4626 MASAAAAGGGGANTGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADLAPKTAENFRQLCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGLKFDDENFVAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVAAGPNNRPKLPCVIAECGEM* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2500 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 195 - -
Lja3g2500 195 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 32 193 IPR002130 GO:0000413|GO:0003755
Lja3g2500 195 SUPERFAMILY Cyclophilin-like 18 195 IPR029000 -
Lja3g2500 195 PIRSF Peptidylpro_ismrse 14 195 IPR024936 GO:0003755
Lja3g2500 195 Gene3D - 17 195 IPR029000 -
Lja3g2500 195 CDD cyclophilin_ABH_like 28 193 - -
Lja3g2500 195 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 77 94 IPR020892 GO:0003755|GO:0006457
Lja3g2500 195 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 31 194 IPR002130 GO:0000413|GO:0003755
Lja3g2500 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 48 63 IPR002130 GO:0000413|GO:0003755
Lja3g2500 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 82 94 IPR002130 GO:0000413|GO:0003755
Lja3g2500 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 140 IPR002130 GO:0000413|GO:0003755
Lja3g2500 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 140 152 IPR002130 GO:0000413|GO:0003755
Lja3g2500 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 168 IPR002130 GO:0000413|GO:0003755
Lja3g2500 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 24 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2500 Lja-Chr3 31791065 31796017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2500 24 193 U-box Gene Family AT5G67530 42.442 3.16e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2500 K09567 - gmx:100305521 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2500 3 31791065 31796017 Lja3g2500 3 31791065 31796017 ECH