Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2485 ATGGCTACTTCAGAGGATGATGGGGGTGAACCAAAATTTCCTAAGCCACTTTTCGTAGAATATGAAGAGGAAGAGCACGAGGATGACGAAGAGGTAGTGGAAGACAATGAATTGGGATGCAGTGGTGACGATACAGATTCAGATAGTTCAGATGATGAATTCAGGAATGTGCTTACCTTAACAGCTGATGAGATACGAGCTTTAACGTTTTGCAGTGAGGCTAATGCATACACATTTTACTGTGCCTACGCGAAGGGAAAGGGATTTGTGGTTAGAAATGATGCATGTGAACGAGATTCTAATAAAAAAGTTGTAATGCGAAAATTTGTATGCAATAGGGAGGGGTTAAGGGAACCAAAGTACTTCATTATGGATAGGCAAAGAGCCCACAGAAGCCTAACCCGCTCTAACTGTCAAGCAAGACTCAAGATACAGTACGATAACAAGAAATGCCAATGGGGTGTGGTGGGGTTTGAGGAGAAACACAACCACGAACTTACCCCGTCGGTATATGTCCCTGTGATTAATGCTTACCGTACAATTAGTGAAGGAGACAAAGCTCAGGCAGAAAGTCTTCACGCATATGGTGTCAGAACCTGTCATATCATGGGTTATTTGACGGCACAGAAGGGGGGATATTCTAAAAACATGGTTTCTAAGCACGGCCTACAGAAAGACAAGTGGGTTTTAAGTGTGTATGAGAAAAAGGAATCGTGGTGCTCCGCATATCTCCGTGATCAGTTTTTTGCTGGGATACAGACGACATCAATATGTGAAGCCATAAATAGTCGTATCAAGGTCTATGTCAAGAGAATAATTAGTCTTATAGACTTCATGCAAACCATTGAGCATGCTTTAAGAGGGTACATATTTAATGAGTTGCGAGCTGATTACGGTAGTATTTTCACTGAACCTGTTTTGACTACCACTCTGTACAAATTTGAAAGTGAAGCTGCAAAACTGTACACGCGTGAAATTTTTAAAGAAGTAAGAAATCAAATTGAGTGTGTGGCTCCATTGAATTATAAAGATAAAAAACCGGATGTAGATGAAGTGAGGTACGAGATGTTCCATTATAGGAGGCCAGAAAGAACCATTGAAGTAGTCTACAACAAGAAAAGTAATCAATTTTACTGTCCATGCCGGCGATTTGAATCACGTGGAATACCATGTTCACATATTTTCAACAGCATGAAATATAAGCTCATGGAAACCATTCGTAAAACACTTATGCTTAGCAGGTGGGGACGGTATGCAAAATCTGAATACTTGTCGGCAACATCCACCGATGAGGTGGACAGTTCTGTAATGAAGACAGCACGATTTGGGGCTATATCTGCTGTGTGTAACGGGCTCTCCGTCTTATGTTCTGACAATCCTGGGCTCTTCACTGACATGATGAATGATATTTTGAGGTTGACGACGAAGTATAAGAATAAGATACTCAAACAAGGCGGACATGTCAACGGGACCAACGACATTCGTGATCCCAATATCGTCAAATCTAAAGGACGCCAGCCTGCAACCCCGAAACCAAAGAAGAATAAAAAGAATAAGAAACAAGCAAGGTGTTCAAACTGTCATAAGCTTGGTCACAACGCAAGGACTTGTTCTACCCTCGTTGGTGGAGAAGATAATGATTTGGAGGGTGATGAGCGATCCACGCAGGAGGATGAGGGCAACGTAAATGACGATAGCACGGGCCAGCCAACCGAGGCCACGACGCAGCCAAGTAGATCCAATTCTAATGTTGGTCGTCGAGGACATAAAGCCAAAAAACATAAGACAAAGAACTCGAATCTCTGTTCAGTTAATGAAAAGGAAAACCTAACCCCCGCAACTGATAAAGATGAAAGTCAGATGGGCTCACGTGCTTTGTCCCCACAAAATTCAACAATGCAACCGCCAACCCAGACAGCTGTTTCTTGTGGTATAGCTCATCCCGGATTTCATTCCGCTGTCCCTCAATACGGAACACGACCACCTAACTTAGCCGTTGGTACGGGTATGCCAGCCCAGGTCAACTTCCCACATGGTTATGGTGGATGGATACCAGACCCGAACATTCAATATGCTTATGGTCAACCCATAAATGGTTCTCAAAATGCTCCTCAATGCTATGGTTATGTTCCGATATTGCCCCGAAACTATCAGAATCTATCTGCTTGTCAACCTATTCATGCTCCTGCTGGTAGAGGACAAAGCCAACACCAAGGCCCCCGTAGCCAAATGCAACATGATGCGGCGAAGAAAAAGGCTGGTACATAA 2268 0.4321 MATSEDDGGEPKFPKPLFVEYEEEEHEDDEEVVEDNELGCSGDDTDSDSSDDEFRNVLTLTADEIRALTFCSEANAYTFYCAYAKGKGFVVRNDACERDSNKKVVMRKFVCNREGLREPKYFIMDRQRAHRSLTRSNCQARLKIQYDNKKCQWGVVGFEEKHNHELTPSVYVPVINAYRTISEGDKAQAESLHAYGVRTCHIMGYLTAQKGGYSKNMVSKHGLQKDKWVLSVYEKKESWCSAYLRDQFFAGIQTTSICEAINSRIKVYVKRIISLIDFMQTIEHALRGYIFNELRADYGSIFTEPVLTTTLYKFESEAAKLYTREIFKEVRNQIECVAPLNYKDKKPDVDEVRYEMFHYRRPERTIEVVYNKKSNQFYCPCRRFESRGIPCSHIFNSMKYKLMETIRKTLMLSRWGRYAKSEYLSATSTDEVDSSVMKTARFGAISAVCNGLSVLCSDNPGLFTDMMNDILRLTTKYKNKILKQGGHVNGTNDIRDPNIVKSKGRQPATPKPKKNKKNKKQARCSNCHKLGHNARTCSTLVGGEDNDLEGDERSTQEDEGNVNDDSTGQPTEATTQPSRSNSNVGRRGHKAKKHKTKNSNLCSVNEKENLTPATDKDESQMGSRALSPQNSTMQPPTQTAVSCGIAHPGFHSAVPQYGTRPPNLAVGTGMPAQVNFPHGYGGWIPDPNIQYAYGQPINGSQNAPQCYGYVPILPRNYQNLSACQPIHAPAGRGQSQHQGPRSQMQHDAAKKKAGT* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2485 755 MobiDBLite consensus disorder prediction 507 526 - -
Lja3g2485 755 ProSiteProfiles Zinc finger SWIM-type profile. 364 402 IPR007527 GO:0008270
Lja3g2485 755 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 178 IPR031052 GO:0006355
Lja3g2485 755 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 29 178 - -
Lja3g2485 755 MobiDBLite consensus disorder prediction 22 52 - -
Lja3g2485 755 MobiDBLite consensus disorder prediction 484 640 - -
Lja3g2485 755 MobiDBLite consensus disorder prediction 726 755 - -
Lja3g2485 755 MobiDBLite consensus disorder prediction 22 50 - -
Lja3g2485 755 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 216 443 IPR031052 GO:0006355
Lja3g2485 755 MobiDBLite consensus disorder prediction 561 584 - -
Lja3g2485 755 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Lja3g2485 755 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 216 443 - -
Lja3g2485 755 MobiDBLite consensus disorder prediction 602 640 - -
Lja3g2485 755 SUPERFAMILY Retrovirus zinc finger-like domains 507 542 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2485 Lja-Chr3 31490846 31494105 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g2485 FAR1 2.1e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2485 - - ccaj:109792835 276.174