Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2483 ATGAGCATGTTAGGCTTTAGAGACCTAGTTTTCATAGCTCCAAACCCTTCTCAAGCCCAACCCTTTTCAGCAGACCACCATGCCAACCTTCCTTTACCTTCATCATCATCATCAGCAGCACTCAGCGTTGGTCTTGGCATTTTCCCACTCCTAACCGCCACTCCTTGCATGCCACAACCTCAACCTCAACCTCAACCTCAGAGCAATACCAATGATAATGTTCATAATCATAATCAAGATTGTGGCAATGGCAACAACAACCCCAGCTTCTGGAACCTCAAGATGTGTCCACCACAACTGAATTCATCTGACAGAAAAGCAGCGATGATTATCAACGTGGAAGAGGAAAACGGTGGTGTCTATGGAAGTGACTACAGAGTGTGCCAGGATTGTGGAAACAGAGCAAAGAAAGATTGCAGCTACAAGAGATGCAGGACATGTTGCAAGGGGCGTGGATTTGACTGCAACACTCACGTGAGGAGCACGTGGATCCCTTTATCTCACCGACGGGAGCGGCATGCGGTGGCTGATGGTGGTAGTGGGGGTGACAGTGATGGTGGTGGTGCTTCTTCTGGAGCTAAGAGGCCAAGGTCATCACAGAATGCTGGTGGTGCTACCTCTCACAGTTCCACCGCCACTAATGCTGCTATGTCAAGGAACTTAAGCTTAGATACTGCCTCTTGTCACCAAGATGCTGGTTTCAAACAGTGTTTACCTGGAAATATTCGTGCACCTGCTGAGTTTAAGTGCCTTAGAGTGTCTGGTATTGGCAATGGTGAAGATGAATTTGCCTACATGGCCACGGTCCGCATTAGCGGCCATGTGTTTAAGGGGTTTCTGTATGATCAAGGGGTTAGTGGGAGAAATGAAATGCCTTGTGTTTCAGAACTGCAATTGGGAAACAATGGCAGTGGAAAGAGTAACAGGGAATGTGCTTCTCCAATTGGAGTTCCAACCAGTGTTTTCCCTGCTTCTGCTTGCTGA 984 0.4787 MSMLGFRDLVFIAPNPSQAQPFSADHHANLPLPSSSSSAALSVGLGIFPLLTATPCMPQPQPQPQPQSNTNDNVHNHNQDCGNGNNNPSFWNLKMCPPQLNSSDRKAAMIINVEEENGGVYGSDYRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVRSTWIPLSHRRERHAVADGGSGGDSDGGGASSGAKRPRSSQNAGGATSHSSTATNAAMSRNLSLDTASCHQDAGFKQCLPGNIRAPAEFKCLRVSGIGNGEDEFAYMATVRISGHVFKGFLYDQGVSGRNEMPCVSELQLGNNGSGKSNRECASPIGVPTSVFPASAC* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2483 327 MobiDBLite consensus disorder prediction 66 82 - -
Lja3g2483 327 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 327 IPR007818 GO:0003700|GO:0006355
Lja3g2483 327 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 327 - -
Lja3g2483 327 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 127 169 IPR006510 -
Lja3g2483 327 Pfam Domain of unknown function (DUF702) 127 285 - -
Lja3g2483 327 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 238 285 IPR006511 -
Lja3g2483 327 MobiDBLite consensus disorder prediction 55 82 - -
Lja3g2483 327 MobiDBLite consensus disorder prediction 193 213 - -
Lja3g2483 327 MobiDBLite consensus disorder prediction 174 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2483 Lja-Chr3 31446540 31448949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2483 1 321 C2H2 Transcription Factor Family AT5G12330 36.795 5.95e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lja3g2483 DUF702 3.1e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2483 - - gmx:100777812 338.576