Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2471 ATGGCAGTTGAATTTGTTGGTAGTGCTCTTCTTTCTGCTTCCCTTGAGGTGGCGTCTGAGAGGCTAGCTTCTGCTGAAATAGTGGATTACTTTCAAGGAAGAAAACTCAATAAGAAGCTGCTGAACAAGTTGAACATCATGCTGCTGTCCATTAATTCTGCATGGCTTGATGCTGTCAAAGATGCTGTGTTTGAAGCAGAAGATCTCATGGATGAAATTGATACAAAAGCCTCCCAATGCAATCTGGAAGCTGAATCTCAGTCCAGTACTAGCAAGGTATGGAATTTCTTCAATGCTGCTGTCAGTTCATTTGATAAGGAAATTGAATCAAGGATGCAAGAAATCCTTGACAGCCTAGAATATCTTGCAAGCCAAAAGGATATACTAGGTTTGAAAGAGGCTGGTGGTTCTGGTGTTGGATTGGGTAGTCAAATGTCACAAAAATTGCCATCAACATCTTTGCTAGGTGAAACAGTTATGTATGGTAGAGATGTTGATAAAGAAATTATCCTTAATTGGCTAATGCTTGACATTGAGAATCATAACCATCAGCAGTCAATAATTTCTATAGTGGGTATGGGTGGGATGGGTAAGACCACTCTTGCCCAACATTTATACAATGACCAAAGGATGGAGATTAAATTTGACATCAAAGCTTGGGTATGTGTTTCAGATGAATTTGATGTTTTTAGGGTAACAAGAATGATATTTGAGGCAATCACTGAGTCAGTTGATGATAGTAGAGACCTAAATATGGTTCAAGGAAGATTGAAGGAAAAATTGTATGGGAAGAGATTTCTTATCATCTTGGATGATGTTTGGAATGAAAACTATATGCAGTGGGAAACTTTGCAAACTCCTTTTAATTATGGGGCTCAGGGGAGCAAAATTCTTGTAACTACACGCAGTGTGAAAGTTGCTTCAACCATGCGGTCAGCTAATATACATCAGCTAGAGCAATTAAAAGAGGAACACTGCTGGGCATTATTTGCTAAATATGCATTCCGGCATGGAAGTCCGCAGTTGAATCCTGAGTTGAAGGAGACTGGTATAGAGATAATTAGAAAATGCAAAGGATTGCCTCTGGCCTTGAAAACAGTTGGAAGTCTCTTGTACACAAAATCATCTTTTCTTGAATGGAAAAATATATTAACAAGTGAGATATGGGACTTACCAGAAGAGGATAGCAATATTATCCCAGCTTTAAGGTTGAGCTATCACCACCTTCCTTCTCATCTCAAGAGATGCTTTGCTTATTGCTCCTTATTCCCCAAAGATTATGTGTTTGAAAAGGACCATTTAGTTCTATTATGGTTGGCTGAAAACTTCCTACAATGCCGTCAAAAGACTAAGAGTATGGAAGAAGTTGGTGAAGAGTACTTTGATGATTTTGGAGATGAAATGAAATTTGTCATGCATGACCTTCTCAATGATTTGGCAAAATATGTATGTGGGGATTTTGTTTACAGGTTGGAGGTTGAAGAAGCACAAAAAATGTCGAACAAGACTCGTCATTTTTCATATTTAAGAAATAGATATGAATCTTCCAAAAGGTTTGAGGACTTACAAAATGCCAATAGGTTAAGAACATTTTTACCACTTGATAAGTTCCCAAAAGTACCTTTTCATGATCATTTTTGGATGTCTAGCAAGTTGATGGATGTATTGATCTCCAAGTTTAAGCTCTTGCGTGTTTTGTCTCTATCTTGTTATTATAATGGGATGGTGGTGCCTGACACTATAGGTAGTCTTAAACATCTCTGTTATCTAGACCTTTCTCATACCAATATAGAAAAGCTGCCTGATTCAACATGTTTGCTCTATAACTTACAAATACTGAAGTTAAAGAATTGTCGGTATTTGAAGGAGCTTCCCTTGAATTTGCATAAACTCACTAATTTGCGCTATCTTGATTTTAGCGGAACTCAGGTGAGAAAGATGCCAATGCATTTTGGAAAGTTGAAGAATCTTCAAGTATTGAATTCCTTCTTTGTGGGACAAGGTAGTGAGTACAATATTCAGCAACTAGATGAACTCAATCTTCAGGGAACACTATCAATTTCAGAGTTGCAGAATATTATCAATCCCCTGGATGCATTAGAAGCAAATTTGAAGAATAAAATACGCCTTGTGAAGCTTGACTTAGAATGGAGTGCAGACCTTGATGACTCACAAAATGCAAGGGAAGTGCTAGAGAAGCTACAACCTTCCAAACACTTGAAGGAGCTGTCAATCTTGAACTATGGTGGTACGCGATTTCCAAATTGGTTTGGAGACAATTCACTATCCAACATGGTTTCATTGAAGTTGAGAAACTGTCAAAATTGTTTCTTGTTGCCTCCACTTGGTCTATTGCCATCTCTAAGGGAACTATTGATTATAGAGCTCACTGGGACAATGGTGATAGGCAGTGAGTTTTATGGGAATGGGAGTAGCTCTTCTTCCACTGCACCTTTTGCATCTTTGGAAACCTTAAAATTCCAGGATATGTATGAATGGGAAGAATGGGAATGTAAACTTATCCCTGGTGCTTTTCCACGTCTCCAAAAGCTTTCAATAAAAAATTGTCCGAATCTCAAAGAGCATTTGCCAGAGAAACTTCCTTGTCTGATAACACTAGAAATTTTTGATTGCATGGAGCTTGTGTCTTTGATTCCCTTGGCTCCATCCATTCATGAATTAGAAATAAATAACTGTGGAAAGCTTCAAATTGATTATCTTCCATCTACTTTAAAAATTCTCAAGATTGGTGGATGCTGCATGGAAGGATCATTCCTTGAAAAGATTGAGCAGACCATATCTGATACCTCTCTTGAAAAAATGCATATTATTGACTGCCCAAATATGAAACTTCCTCTATTCCATGGTTACAATTTCCTTGTAGAATTAAGCATTAGGAGTAGCTGTGATTCTCTAAGGAACTTTCCACTGAATTTCTTCCCTAAACTCCATTCCCTCCGTTTAGGTGAGTGTTGTAACTTTGAAATGATTTCACAGGAGCACAGTCATGATCTCAAGTTTCTGCTGATTACTAGGTGCTCTAAATTTGTATCGTTCCCTGAAGGAGGATTCTCTGCACCTGGACTAGTGTTTTGTCATCTTCATAAATTGGAGAACTTAAAATCATTGCCTGAATGCATGCACACCCTCCTTCCATCACTTGTTGGGCTAATTATACAGGATTGTCCTGAACTGGAGTTGTTTCCTGATGGAGGTTTGCCATCAAGCCTAAAATATTTGTATCTCCGCAATTGCGCCAAACTTATGGCCTCTTTGAAACGGGCTTTGCGAACCACCACCTCTCTTCTTACCTTGTATATTGGAGAAATGGATAGTGTGGAGTCTTTTCCTGATGAAGGGTTGCTGCCACATTCTCTTACTTCTGTATCCATCACTTGGTGTCCAAATCTTAAGAAACTGGACTACATGGGTCTGTGCCGCCCCTCCTCGCTTACAAGGTTGTATCTTTCTAACTGCCCCAGACTCCAATGCTTACCAGAGGAAGGTCTTCCCAAATCCATCTCAACTCTACAATTTTGGGGTGATTGCTTGTTGCTCAAGAAGCGCTGCCAGAAACCAAATGGTGAAGATTGGGGGAAGATTAGTCACATTCAATGCATAATAATTGACAGTGACATAATAACATGA 3648 0.3879 MAVEFVGSALLSASLEVASERLASAEIVDYFQGRKLNKKLLNKLNIMLLSINSAWLDAVKDAVFEAEDLMDEIDTKASQCNLEAESQSSTSKVWNFFNAAVSSFDKEIESRMQEILDSLEYLASQKDILGLKEAGGSGVGLGSQMSQKLPSTSLLGETVMYGRDVDKEIILNWLMLDIENHNHQQSIISIVGMGGMGKTTLAQHLYNDQRMEIKFDIKAWVCVSDEFDVFRVTRMIFEAITESVDDSRDLNMVQGRLKEKLYGKRFLIILDDVWNENYMQWETLQTPFNYGAQGSKILVTTRSVKVASTMRSANIHQLEQLKEEHCWALFAKYAFRHGSPQLNPELKETGIEIIRKCKGLPLALKTVGSLLYTKSSFLEWKNILTSEIWDLPEEDSNIIPALRLSYHHLPSHLKRCFAYCSLFPKDYVFEKDHLVLLWLAENFLQCRQKTKSMEEVGEEYFDDFGDEMKFVMHDLLNDLAKYVCGDFVYRLEVEEAQKMSNKTRHFSYLRNRYESSKRFEDLQNANRLRTFLPLDKFPKVPFHDHFWMSSKLMDVLISKFKLLRVLSLSCYYNGMVVPDTIGSLKHLCYLDLSHTNIEKLPDSTCLLYNLQILKLKNCRYLKELPLNLHKLTNLRYLDFSGTQVRKMPMHFGKLKNLQVLNSFFVGQGSEYNIQQLDELNLQGTLSISELQNIINPLDALEANLKNKIRLVKLDLEWSADLDDSQNAREVLEKLQPSKHLKELSILNYGGTRFPNWFGDNSLSNMVSLKLRNCQNCFLLPPLGLLPSLRELLIIELTGTMVIGSEFYGNGSSSSSTAPFASLETLKFQDMYEWEEWECKLIPGAFPRLQKLSIKNCPNLKEHLPEKLPCLITLEIFDCMELVSLIPLAPSIHELEINNCGKLQIDYLPSTLKILKIGGCCMEGSFLEKIEQTISDTSLEKMHIIDCPNMKLPLFHGYNFLVELSIRSSCDSLRNFPLNFFPKLHSLRLGECCNFEMISQEHSHDLKFLLITRCSKFVSFPEGGFSAPGLVFCHLHKLENLKSLPECMHTLLPSLVGLIIQDCPELELFPDGGLPSSLKYLYLRNCAKLMASLKRALRTTTSLLTLYIGEMDSVESFPDEGLLPHSLTSVSITWCPNLKKLDYMGLCRPSSLTRLYLSNCPRLQCLPEEGLPKSISTLQFWGDCLLLKKRCQKPNGEDWGKISHIQCIIIDSDIIT* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2471 1215 Pfam NB-ARC domain 168 385 IPR002182 GO:0043531
Lja3g2471 1215 Gene3D - 320 410 IPR042197 -
Lja3g2471 1215 Gene3D Ribonuclease Inhibitor 923 1071 IPR032675 -
Lja3g2471 1215 Gene3D Ribonuclease Inhibitor 1072 1194 IPR032675 -
Lja3g2471 1215 CDD AAA 161 273 - -
Lja3g2471 1215 Gene3D - 143 316 IPR027417 -
Lja3g2471 1215 PANTHER OS05G0414200 PROTEIN 23 951 - -
Lja3g2471 1215 SUPERFAMILY L domain-like 459 948 - -
Lja3g2471 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 420 IPR027417 -
Lja3g2471 1215 PRINTS Disease resistance protein signature 357 371 - -
Lja3g2471 1215 PRINTS Disease resistance protein signature 187 202 - -
Lja3g2471 1215 PRINTS Disease resistance protein signature 605 621 - -
Lja3g2471 1215 PRINTS Disease resistance protein signature 260 274 - -
Lja3g2471 1215 ProSiteProfiles Leucine-rich repeat profile. 586 607 IPR001611 GO:0005515
Lja3g2471 1215 PANTHER DISEASE RESISTANCE PROTEIN RP 23 951 IPR044974 GO:0006952
Lja3g2471 1215 SUPERFAMILY L domain-like 909 1202 - -
Lja3g2471 1215 Gene3D Ribonuclease Inhibitor 544 909 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2471 Lja-Chr3 30973623 30979173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2471 160 696 WRKY Transcription Factor Family AT5G45050 23.328 7.79e-11 65.1