Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2459 ATGGGAGTTCCAGAAAAAGACCCTCTTGCTCAATTGAGCTTACCTCCTGGTTTCAGATTCTTCCCCACTGATGAGGAGCTTCTGGTTCAGTATCTCTGCCGTAAGGTTGCTGGCTATCATTTTTCTCTGCCAATCATTGCTGAAATTGACCTGTACAAGTTCGACCCTTGGGTTCTACCAGGCAAGGCGATTTTCGGTGAGAAAGAGTGGTATTTTTTCAGCCCCAGGGACAGGAAGTACCCAAACGGTTCTCGACCTAACAGAGTTGCTGGCTCTGGGTATTGGAAAGCCACCGGAACTGACAAAGTCATTACCACTGAAGGTAGAAAAGTTGGAATAAAAAAAGCACTCGTTTTCTACATTGGCAAAGCACCAAAAGGCACCAAAACTAACTGGATCATGCACGAGTATCGCCTTCTCGACTCTTCGCGGAAACACAAACTTGGCAGCTCCAGGCTAGATGAGTGGGTTTTGTGTCGCATATACAAGAAGAAATCGAGCACGCAGAAGGAAGCGGCAGCAACATTTTCGAGCAAAGAATGCAGCTATGGATCTTCATCGCCGTCCACGTCGTCTCACGTGGAGGACATGCTGGAGTCGTTGCCGGAAATCGATGACCGGTGCTTTGCGCTGCCGCGCGTGAACTCGCTCCGGACGCTGCAGCAGGACGAGAAGTTGGGTTCTGCCACCGGGATTTTCACGGACTGGGGTAACCCGACGGATCTGGACACAGTGCCCGAGTTTGTTCCGGGGAGCCAGGCTCAGTGGATGGGGAATTACAGTTGCAATGACCTTTATGTCCCTTCTGTGCCGCAGTTCGGCCACGTGGACTGGTCCGCAACAACTAGGAACACGGCGGAGGAAGAGGTTCAGAGCGGTGTGAGGACCCATCGGGTTGCTGAGAGTTCCGGGTTTTATCAGCAGAATCCGGATTTGACCACGCAGCGATTATTGCCCGGTTCTGTTGACCCGTTTGGGTTCGGGTATTTGGGTCAGCAAACTGGGTTCGGTTTCAGGGACTGA 1023 0.5181 MGVPEKDPLAQLSLPPGFRFFPTDEELLVQYLCRKVAGYHFSLPIIAEIDLYKFDPWVLPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRKHKLGSSRLDEWVLCRIYKKKSSTQKEAAATFSSKECSYGSSSPSTSSHVEDMLESLPEIDDRCFALPRVNSLRTLQQDEKLGSATGIFTDWGNPTDLDTVPEFVPGSQAQWMGNYSCNDLYVPSVPQFGHVDWSATTRNTAEEEVQSGVRTHRVAESSGFYQQNPDLTTQRLLPGSVDPFGFGYLGQQTGFGFRD* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2459 340 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Lja3g2459 340 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Lja3g2459 340 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Lja3g2459 340 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Lja3g2459 340 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 311 - -
Lja3g2459 340 PANTHER NAC TRANSCRIPTION FACTOR 56 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2459 Lja-Chr3 30683388 30684899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2459 1 307 NAC Transcription Factor Family AT4G27410 58.282 1.03e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g2459 NAM 4.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2459 - - gmx:732639 520.776