Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2457 ATGTCTTCTTCATCCGTAGGAACCTCTTGGGTTTCTCCAAAAAAGCATGATGTATTCATCAGCTTTCGAGGCGAGGACACCCGAACCAACTTCACATGCCATCTCCATTCTTCTCTCTGCGACAACGGTATCCGAACATACATAGATTACAAGCTTCGAAAAGGCGATGATGTTTGGCCATCACTTTCCCAAGCAATCCAGGATTCACACATATCCATTGTCGTTTTCTCTGAGAACTACGCTTCCTCAAGATGGTGTTTGGAAGAACTCGTCAAGATCATGGAATACCGAAAACATCAGAGTCAGGTTGTTATCCATGTCTTCTATGAAACAAACCCATCATGCCTTCAGAAGCAGAGAGGGAGTTACGAGGTAGCATTTGCAAACCATGAGCAGCATCTCACCGACGATGATTCTGATCAAGACAAACTGCGTAGGTGGAAGACTGCTCTCCCTCAAGCTGCTAACATATTAGGATGGGACGCTCGAACCCCCAGGGATGACTCTCAAGCAATCCACAGTATTGTCAATGACGTTTCGCAAAAGCTATACTTTATGTACCCTAATGAACTGAAAGGCATTGTTGCAAGTGATGAACCCTCTAAAGAACTTGATTTATTACTGAAAAGCTTTCCAATAATTGGAATTTGGGGAATGGGTGGGATAGGTAAGACCACAATCGCTAAAGTTCTGTTTGCCAAGCTCTTCCCCCAGTATGATAGTGCCTGTTTCTTGGAAAATATAAGAGAAGAATCAGAAAGGGTTGGACTAACATCTTTACGTGATAAGCTTTTCTATAAGCTACTAAAAGAAGAAATTCCTGCGTCTGATGTTGTAAGATCCACATCAATTATGAGGAGGCTCAGTAGTAAACAGGTTCTGATTGTACTTGACGATGTAGATAGTTTTGAGCAATTGGAATATTTGTATGGAGAGCGCAGTGATGTAGGAGAATATATTACACTCATTGTAACAACAAGAGATAGGAAATTGCTTATTGGAAGAGTTGATAAGATATATGAGGTCAACAAAAAGAATGATGAAGAATCTCTAGAAATTTTTTGCTTGAATGCCTTCAAGGGAAGTCATCCCCATGAAGGATATAAGAATCTTTCAGAGAGGGCAGGAATTCCATTAGCTTTAAAAGTTTTGGGTTCACATCTCTATTCCAGAAGTCGTGAATTTTGGGAAAGTACATTAAGCAAACTTGAGAAGTATCCCAATGAGAAAATTTTGAATGTGCTAAAAGTGAACAAACATATGGCGGTAGGGATAGTTGATGCATGTGATTTTTTTGCAGGTAGTGGAATAGATGACCTTGTAGATAAAGCTCTTATAACTTTTTCATATAATAACAACATACAAATGCATGATTTTCTGCAAGAAATAGGTTTGGATATAGTTCGTAAAGAGTGTTTGAAAAACCCTAGAAGACGCAGCCGATTGAGGGATAATGAAGTTTATGATGTACTTAAAAATAACAGGGGGACTGACACTATTGAAAGAATAACTTTATATTTGTCTCAAGTAATGCTTAATTTGAGACTTCTTCGGTTATATGTCCCCGAGGGTAAGAAACCATACAATGTATATCACTGGACAGTTCTTGAGGCATTTTCTGATAAATTGAGGTATGTTAAGTGGGACAGATTCCCTTTATCGTCTCTTCCACCAAACTTTTGTGCTGAGCATCTTGTTGAGATTTGCATGCCACATAGCCATGTTAAAGAACTTTGGCAGGGGGTACATTGTAAACAATTGCTAAAGCTTCTGGATTTGTCTAAGGCGTCAAAGCTTAAAGAAGTGGATCTCTCCGGTTGTGAAAGCTTGCTTGATGTTCATCCATCTATTTTGTCTCTCAAAACACTTGAAACTTTGATTCTTAACAGGTGCGAAAAACTCAAGAGTCTTAAAAGTGAGTGGCATTCAAAATCACTAGTGATTGTCAGTGTCAATGGTTGCACAGGACTTGAGGAATTCGCAATATTGCACTCATCTATCGGTCGTCTAAGCAAGCTTGTGTGGCTCAATCTACAAGGTTTATTGCTAGTGAATCTTCCAGATGAGCTATCATGCCTGACATCTCTGGAGGAGCTTAGGATTTTTAGCTGCCGACTAGTTGGCAATAAGAAGCTAAGTGTCATGTTTGACCGCTTGCGATCCTTAAAATTACTCCGGTTGTATTGTTGCAGTAATCTGTTGGGACTCCGAGACAACATCATCAACTTATCATCATTACATGAATTGAGGGTCGACGGAAGCAATATTAAGATTTTGCCGCCAAGCATCAGTTGTCTTCCAAACCTGGAGATTGTATCCTTAAAACATTGTACGTTGCTTCGGTTAATACATGGGCTTCCACCATTCATCAAAGAGCTTTATGCTGTCAGCTGTAGCTCATTGACAACGGTATCCCCTTCAAAGGCTTTTTCAATAATCCAGATGGAAGCAGAGGATAAATACATTTCCTTTAGGAATGGAACAAAACTGAGTGATTGTTCACGCGTTCGGATTATGGAAGACGTCGTGTTTGATATGAAGGTTGTTGCATTGCATAATTTATTTGTAAGATGGGAACACAAGAATAGTGCCCACTTAAATTATAGCAGTGTTAAGGTTTGTCTACCAAGAAGGAGAGTCCCGAGGCATTTTACATATCGAACCAAACGGTCCTCCTTCACCATTGAACTTCCAAACCCACATTCTGACTTGCTAGGCTTTGTTTACTCTGTGGTTCTTACTGTTGTTCCACCCCTTAATCAGGTGTTTTTGGGTGGTGTTAAAATCCATTGTCATTGTGAATGCCGCCTGGCAGACGGTACAACTGTGGGAAAAGAGACTACATGGCATGGTGAGCACATCTTAGGATTGGATTCCGATCATGTTTTTGTGTGGTTTGATCCATTCCATTGCTACAGCTTTCTCCTCTATTATAATAAAGTTGATTCACTTGTTGACTTCAAGTTCTTTGTTACAACTGATAGTGGGGAACCTCATGAGCTGATCAAAATCAAGGAGTGTGTATCCACTTACTCCATGTCTCATGGTTAG 3051 0.3999 MSSSSVGTSWVSPKKHDVFISFRGEDTRTNFTCHLHSSLCDNGIRTYIDYKLRKGDDVWPSLSQAIQDSHISIVVFSENYASSRWCLEELVKIMEYRKHQSQVVIHVFYETNPSCLQKQRGSYEVAFANHEQHLTDDDSDQDKLRRWKTALPQAANILGWDARTPRDDSQAIHSIVNDVSQKLYFMYPNELKGIVASDEPSKELDLLLKSFPIIGIWGMGGIGKTTIAKVLFAKLFPQYDSACFLENIREESERVGLTSLRDKLFYKLLKEEIPASDVVRSTSIMRRLSSKQVLIVLDDVDSFEQLEYLYGERSDVGEYITLIVTTRDRKLLIGRVDKIYEVNKKNDEESLEIFCLNAFKGSHPHEGYKNLSERAGIPLALKVLGSHLYSRSREFWESTLSKLEKYPNEKILNVLKVNKHMAVGIVDACDFFAGSGIDDLVDKALITFSYNNNIQMHDFLQEIGLDIVRKECLKNPRRRSRLRDNEVYDVLKNNRGTDTIERITLYLSQVMLNLRLLRLYVPEGKKPYNVYHWTVLEAFSDKLRYVKWDRFPLSSLPPNFCAEHLVEICMPHSHVKELWQGVHCKQLLKLLDLSKASKLKEVDLSGCESLLDVHPSILSLKTLETLILNRCEKLKSLKSEWHSKSLVIVSVNGCTGLEEFAILHSSIGRLSKLVWLNLQGLLLVNLPDELSCLTSLEELRIFSCRLVGNKKLSVMFDRLRSLKLLRLYCCSNLLGLRDNIINLSSLHELRVDGSNIKILPPSISCLPNLEIVSLKHCTLLRLIHGLPPFIKELYAVSCSSLTTVSPSKAFSIIQMEAEDKYISFRNGTKLSDCSRVRIMEDVVFDMKVVALHNLFVRWEHKNSAHLNYSSVKVCLPRRRVPRHFTYRTKRSSFTIELPNPHSDLLGFVYSVVLTVVPPLNQVFLGGVKIHCHCECRLADGTTVGKETTWHGEHILGLDSDHVFVWFDPFHCYSFLLYYNKVDSLVDFKFFVTTDSGEPHELIKIKECVSTYSMSHG* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2457 1016 SMART AAA_5 210 346 IPR003593 -
Lja3g2457 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 417 IPR027417 -
Lja3g2457 1016 Gene3D - 346 427 IPR042197 -
Lja3g2457 1016 Gene3D - 13 183 IPR035897 -
Lja3g2457 1016 Gene3D Ribonuclease Inhibitor 509 821 IPR032675 -
Lja3g2457 1016 SMART till_3 15 157 IPR000157 GO:0007165
Lja3g2457 1016 PRINTS Disease resistance protein signature 213 228 - -
Lja3g2457 1016 PRINTS Disease resistance protein signature 594 610 - -
Lja3g2457 1016 PRINTS Disease resistance protein signature 287 301 - -
Lja3g2457 1016 PRINTS Disease resistance protein signature 374 388 - -
Lja3g2457 1016 ProSiteProfiles TIR domain profile. 14 183 IPR000157 GO:0007165
Lja3g2457 1016 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Lja3g2457 1016 Gene3D - 184 337 IPR027417 -
Lja3g2457 1016 Pfam NB-ARC domain 213 409 IPR002182 GO:0043531
Lja3g2457 1016 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 924 IPR044974 GO:0006952
Lja3g2457 1016 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 924 - -
Lja3g2457 1016 Pfam TIR domain 15 189 IPR000157 GO:0007165
Lja3g2457 1016 SUPERFAMILY L domain-like 456 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2457 Lja-Chr3 30642914 30647176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2457 10 770 WRKY Transcription Factor Family AT4G12020 29.177 1.20e-70 256