Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2434 ATGCCCTCAATGAAACTTCAATGGAGATCCTTGGTACCTGGCTGTTTTATGGACAAGCACTCATCCTTGGAAACCCCAAACATAGTTTCCAAAAAGACATCTTCTAGGAGAGTCTCCCTCTCTGATGTGAGTGATTTATCAGATTATTCATTACTCTCCATCATGAGTGATTTATCCAACTCTCTAGTGGGATCAAATCTTCATATTTTCACTTACCAGGAGCTCACAGAGATTACACACAACTTCAGCAAATCCAACTTTCTTGGGGAAGGTGGGTTTGGGAAGGTATATAAAGGGTTTATTGATGACAAGCTTAAGCCTACACTTGTTGCTCAGACAGTAGCAGTTAAGGCCTTAAACCTGGATGGAAATCAAGGCCACAGGGAGTGGTTGGCTGAAGTCATCTTTCTGGGGCAGTTGAAGCATTGTCATCTGGTCAATTTAATTGGCTACTGCTGTGAAGATGAGCACTGGCTTCTTGTGTATGAATACATGGAGCGAGGCAATCTAGAGGAAAAGCTTTTCAAAGGTTATTTAGCAACCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAAGGACTTGCTTTCCTTCATGAAGAAGAGAAGCCAGTCATATACAGAGATGTTAAAGCCTCAAACATTCTTTTGGATGTTGATCACAATGCCAAGCTCTCAGATTTTGGTTTAGCAATAGATGGACCAGATAAAGATCATTCATACATTACAACTAGTGTGATGGGTACCCATGGTTATGCTGCTCCTGAGTATATCATGACTGGCCGTTTGACAACCATGAGCGATGTGTATAGCTTTGGAGTTGTTCTTTTGGAGCTTCTCACAGGAAGAAGATCTGTGGACATGAAACGAGCCACCAGAGAAAAAGATTTGGTGGAATGGGCTAGGCCTCTATTGAAAGATTACCATAAACTTGAAAGAATAATGGATCCAAGGCTTGAGGATCAGTACTCAACTGAAGGGGCTAGAAAGGTAGCAGCTCTGGCTTATCAATGTCTAAGCCATCATGACAAGAGCAGGCCCACCATGCGAACCGTGGTTAAGAGCTTAGACCCTCTGATGAAACTGAATGATATCCCAGTTGGCCATTTTGTTTATGTGGTTCCGAGTGAAGAATATTCACTCAAACTAGCAGAAAATGACTGTGATGAAATCAAAGCTAAAGAAGAAGAGAAAAAGGAGAAAGGTCACAACAACCGGCACCGAAACAGCCGGGGTAATAGACGCCGGGTAAATAGCATCATTGAGGAATGA 1281 0.4239 MPSMKLQWRSLVPGCFMDKHSSLETPNIVSKKTSSRRVSLSDVSDLSDYSLLSIMSDLSNSLVGSNLHIFTYQELTEITHNFSKSNFLGEGGFGKVYKGFIDDKLKPTLVAQTVAVKALNLDGNQGHREWLAEVIFLGQLKHCHLVNLIGYCCEDEHWLLVYEYMERGNLEEKLFKGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDVDHNAKLSDFGLAIDGPDKDHSYITTSVMGTHGYAAPEYIMTGRLTTMSDVYSFGVVLLELLTGRRSVDMKRATREKDLVEWARPLLKDYHKLERIMDPRLEDQYSTEGARKVAALAYQCLSHHDKSRPTMRTVVKSLDPLMKLNDIPVGHFVYVVPSEEYSLKLAENDCDEIKAKEEEKKEKGHNNRHRNSRGNRRRVNSIIEE* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2434 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Lja3g2434 426 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2434 426 MobiDBLite consensus disorder prediction 397 426 - -
Lja3g2434 426 Gene3D Phosphorylase Kinase; domain 1 53 164 - -
Lja3g2434 426 Coils Coil 384 404 - -
Lja3g2434 426 Gene3D Transferase(Phosphotransferase) domain 1 165 369 - -
Lja3g2434 426 SMART serkin_6 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2434 426 PANTHER OS01G0588500 PROTEIN-RELATED 27 413 - -
Lja3g2434 426 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
Lja3g2434 426 Pfam Protein tyrosine and serine/threonine kinase 85 359 IPR001245 GO:0004672|GO:0006468
Lja3g2434 426 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Lja3g2434 426 PANTHER BNAA02G16030D PROTEIN 27 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2434 Lja-Chr3 30040376 30042067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2434 65 364 Receptor kinase-like Gene Family AT3G58690 51.634 1.76e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja3g2434 PK_Tyr_Ser-Thr 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2434 - - gmx:100788896 635.565