Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2424 ATGGCCACCACCACCATCACAACAACAACAACAGAGCGAGACATCTCACGTGCTTCCCGCATGCACGACTACACCACCACAGACGATGAAGACGAAGATGTCGTTGAAGACAGCGAGGAGGACAACCAAGAAGAAAGAGAAGAGCGCGGTGGGGCGGATGACAGCACCGTCAAGCAGGGTTGGTTGTGCGGCGGAGGTCGGCGGCTGGCAGCAGTGGACACAAGGGGGAAGTGGTTGGAGGAGTGGAATAGAGCGTACCTGCTGGTTTGCGCGGCGGGGCTGTTCGTGGACCCGCTCTTCTTCTACGCCCTCTCTGTCAGTGACTCCTGCATGTGCCTCTTCGTTGATGGGTGGTTCGCCGTCACCGTCACCGTCCTCCGGTCCATGACTGATGCTCTTCACCTCTGGAACATCTTGCTCCGCTTCAAGATGCCCAAGCGCACCTCCGGCTTCGGCAGCGTTGCGCCGCGTGGCTCCGTCGCTCTTACCTATCTTAGGTCCCGGAGGGGCTTCTTCCTTGACCTCTTTGTCATTCTTCCTATACCTCAGATTGTGCTTTGGGTGGTAATCCCTTCTTTGTTAGAGAAAGGATCAACTACAGAGGTGATGACAGTGTTGTTAATCATGTTTCTTTTCCAATTCCTTCCCAAAATTTATCATTCTGTATCTCATCTTCGACGCACACAAAACCTCTCTGGCTTCATCTTTGGAACCGTTTGGTGGGGAATCGCCCTTAACATGATCGCCTATTTTGTCGCTTCCCATGCAGCTGGGGCTTGTTGGTACTTGCTGGGGATGCAAAGGGCAGCAAAGTGTCTGAAAGAGCAGTGCCAGAAAACAGGTGGTTGTGGAATTCAAATGCTGTCTTGTCATAAGCCAATGTATTATGGAAGCACAAGCTTATTGAGTAGGGACAGAGCAAGATTGGCGTGGGCAGAGAACAGAGAAGCAAGGTCTACATGCTTAGATGGCCCTAATAATTACAACTATGGAGCTTATAAATGGACTGTTCAACTTGTCACCAACGGTAACCGATTGGAAAAGATACTTTTTCCTATTTTCTGGGGCCTAATGACTCTCAGCACTTTCGGGAACCTGGAGAGCACAACGGAATGGCTAGAAGTAGTTTTCAACATCATTGTGTTAACCAGTGGCCTTCTTCTTGTCACCATGTTGATTGGAAACATCAAGGTATTTTTGCATGCAACAACATCAAAGAAGCAAGCGATGCAATTGAAGATGAGGAATATTGAATGGTGGATGAGGAAAAGGCACTTGCCTACAGGGTTTCGGCAGCGCGTGAGGAACTATGAGAGGCAGCGATGGGCTGCAATGCGAGGAGTTGATGAATGTGAGATGACCAGAAATCTCCCTGAGGGACTAAGAAGAGACATCAAGTACCATCTTTGCTTAGATTTGGTGAGACAGGTGCCACTATTTCAACACATGGACGATCTGGTTCTAGAAAACATCTGTGACCGGGTGAAGTCTCTGATATTCACAAAAGGAGAAACAATAGCTAGAGAAGGAGACCCAGTTCAAAGAATGTTGTTTGTAGTGAGAGGTCACCTACAAAGCAGTCAAGTCCTGAGAGACGGCGTCAAGAGTTGCTGCATGTTAGGACCCGGAAACTTCAGCGGCGACGAGCTTCTTTCATGGTGCATGAGGAGGCCTTTCGTCGAACGCCTTCCGCTCTCTTCATCCACGCTCACCACACTGGAAACCACAGAGGCATTTGGCCTTGAAGCGGAGGACGTGAAGTATGTGACACAACATTTCAGGTACACTTTTACAAAGGAAAAGGTGAAGAGAAGTGCCAGGTACTACTCACCTGGGTGGAGAACTTGGGCTTCTGTGGCCATTCAACTGGCGTGGAGGAGATACAGACACAGGTTGACTTTGACCTCCTTGTCCTTTATAAGGCCTAGGAGACCCTTGTCACGATCCACTTCTTTAGGAGAGGACAGGCTTCGACTCTACACTGCCCTGTTAACCTCACCAAAGCCTAATCAGGATGATTTTGAGTTTTGA 2031 0.4934 MATTTITTTTTERDISRASRMHDYTTTDDEDEDVVEDSEEDNQEEREERGGADDSTVKQGWLCGGGRRLAAVDTRGKWLEEWNRAYLLVCAAGLFVDPLFFYALSVSDSCMCLFVDGWFAVTVTVLRSMTDALHLWNILLRFKMPKRTSGFGSVAPRGSVALTYLRSRRGFFLDLFVILPIPQIVLWVVIPSLLEKGSTTEVMTVLLIMFLFQFLPKIYHSVSHLRRTQNLSGFIFGTVWWGIALNMIAYFVASHAAGACWYLLGMQRAAKCLKEQCQKTGGCGIQMLSCHKPMYYGSTSLLSRDRARLAWAENREARSTCLDGPNNYNYGAYKWTVQLVTNGNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRHLPTGFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCMRRPFVERLPLSSSTLTTLETTEAFGLEAEDVKYVTQHFRYTFTKEKVKRSARYYSPGWRTWASVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSTSLGEDRLRLYTALLTSPKPNQDDFEF* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2424 676 Pfam Ion transport protein 82 396 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja3g2424 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 15 673 - -
Lja3g2424 676 SUPERFAMILY Voltage-gated potassium channels 76 400 - -
Lja3g2424 676 SUPERFAMILY cAMP-binding domain-like 405 593 IPR018490 -
Lja3g2424 676 MobiDBLite consensus disorder prediction 1 58 - -
Lja3g2424 676 CDD CAP_ED 479 559 IPR000595 -
Lja3g2424 676 Gene3D Jelly Rolls 477 595 IPR014710 -
Lja3g2424 676 ProSiteProfiles cAMP/cGMP binding motif profile. 479 558 IPR000595 -
Lja3g2424 676 Gene3D Helix hairpin bin 404 470 - -
Lja3g2424 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 673 - -
Lja3g2424 676 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2424 Lja-Chr3 29727066 29738078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2424 60 675 Ion Channels AT5G54250 77.273 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2424 K05391 - gmx:100796761 1092.03