Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2406 ATGGACCTGAAGGCAAATCGTGGTCCTCTCCTCAGTGATACAGCAACCTTAACAAGGTCAAGGTCAAGGCTAGGTGTGACTTCCACTCAGTTAGCTTGCTCTCCTCCAGCAGGGGCCACAACCTTTTTGCACGGTTCATCGATAGCAATTCCGAGGAAGAAAACAGGAGTTCTTGATGACGTTCGTTCTAACGGTTGGCTGGATTCCATGAAATCATCTTCTCCAACTCACAAGAAAATATCTAAGGATGTTAGCAATGGAATCGCATCATCCGATGCCGATGCTGCTTATTTTACTTGGCTGCTAAAGTATCCATCAGCACTTGCATCTTTTGAGCAAATTATTAACTGTGCGAAAGGCAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCAATTGTGGACAATCCTGACTCTGCATTCATGTCTGACAGTATGCGTGCTGCTGTTAAAAATGTGGCAGAATATTTTCCGACAGCAATAATTAGTGGAAGAAGCCGTGAAAAGGTGTATGATTTTGTTGGAGTAACAGAACTCTATTATGCCGGTAGTCATGGAATGGACATTCTTGGTCCTCTAAGACAATCTGTATCTGATAATCACCCTAACTGCAATAGGACTACTAACAAGCAGGGTAAAGAAGTTAATTTATTCCAACCTGCTGCTGAATTCATACCCATGATTGATGAGGTACGTGGCTTGCTCCTTGAGTGTACAAAAGACATCAAAGGAGCAAAAGTTGAGAACAACAAATTTTGTGTCTCTGTGCATTACCGTAATATAGATGAGAAGAATTGGGGTATGGTTGGACAGCGCGTATATGATATACTGAAGAACTATCCCCGCTTACGATTAACTCATGGGCGAAAGGTTTTAGAGGTCCGTCCGGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTGCTTGAGTCACTTGGACTTAACGACAGTGATGATGTGCTAGCTATATATGTTGGAGATGATCGGACAGATGAAGATGCATTTAAGGTTTTGAGAGAAGCTTATAAAGGTTGTGGCATATTAGTGTCCTCTGCCCCAAAGGAAAGCAACGCATTTTACTCTCTTCATGATACTTCAGAGGTTATGGAATTCCTCAAATCACTCGCGGCATGGAAATCAAGCTCGTTAAATAGCTTTGTATAA 1176 0.4201 MDLKANRGPLLSDTATLTRSRSRLGVTSTQLACSPPAGATTFLHGSSIAIPRKKTGVLDDVRSNGWLDSMKSSSPTHKKISKDVSNGIASSDADAAYFTWLLKYPSALASFEQIINCAKGKRIALFLDYDGTLSPIVDNPDSAFMSDSMRAAVKNVAEYFPTAIISGRSREKVYDFVGVTELYYAGSHGMDILGPLRQSVSDNHPNCNRTTNKQGKEVNLFQPAAEFIPMIDEVRGLLLECTKDIKGAKVENNKFCVSVHYRNIDEKNWGMVGQRVYDILKNYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNDSDDVLAIYVGDDRTDEDAFKVLREAYKGCGILVSSAPKESNAFYSLHDTSEVMEFLKSLAAWKSSSLNSFV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2406 391 Gene3D - 221 389 IPR023214 -
Lja3g2406 391 Gene3D - 123 218 IPR023214 -
Lja3g2406 391 TIGRFAM T6PP: trehalose-phosphatase 120 380 IPR003337 GO:0003824|GO:0005992
Lja3g2406 391 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 386 IPR044651 GO:0004805|GO:0005992
Lja3g2406 391 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 125 346 IPR006379 -
Lja3g2406 391 CDD HAD_TPP 124 374 - -
Lja3g2406 391 Pfam Trehalose-phosphatase 126 369 IPR003337 GO:0003824|GO:0005992
Lja3g2406 391 SUPERFAMILY HAD-like 124 382 IPR036412 -
Lja3g2406 391 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2406 Lja-Chr3 29424391 29428927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2406 110 386 Trehalose Biosynthesis Gene Families AT1G23870 26.102 7.58e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2406 K01087 - gmx:100819495 594.734