Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2402 ATGGAGGCAAATATCTATCTTATAACTTCTCTATACATGCAGGGTTCAGAAATTAAAGTGAGGGAGAATATGAATGATTTTTCCCATGTTCCCCCCGGATTTAGGTTCCATCCCACGGATGAAGAACTTGTTGATTATTACCTCAGGAAGAAAGTTACTTCAAGGAGGATCGACCTCGATGTCATCAAAGATATTGACCTCTATAAAATTGAGCCCTGGGATCTTCAAGAGCTTTGCACTTTGGGAAGTGAAGAACAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACGGGAACCCGTACGAATAGAACAACAGCAGCAGGATTTTGGAAAGCAACGGGAAGAGACAAAGCAATCTATTCTAAGCTGCATGACTTGGTAGGGATGAGGAAAACATTAGTCTTTTATAAAGGTCGAGCACCCAATGGGCAAAAGTCTGATTGGATCATGCATGAGTATCGCCTTCAAACCAATGAACATGCCACACCACAGGCAAAAGGATGGGTTGTGTGTAGAGTATTTAAAAAGAGACTACCAACCATGCTGAAACTGAGTGATCATCATGATTCTCCCTGTTGGTATGATGACCACCAAGTCTCTGTCATGCAAGACATGGACTCACCAAACCAAACCTCTCAACCTAAGAATTCAGCCTACCATTTTCTTCAGCTTCCATTGGAGAACCAAAAACTCCTTCAATCTACTTCCACCATAAGCCCTAACAAAATGGCAGCATATGGCACAGAAGACAACCATGCTGCATCAATCATACAACAAGCTCAACAGCAAAACCTTCAGCAAGTGGCTCATGATTGGAGAGCTCTTGACAAGTTTGTTGCTTCACAACTCAGTCAAGATATAACCAAAGACATCTTTCAGTTGAAGAACAATAGCAATGAAGAATTCAGGGACATAGAAAACCATGAAATGAAGCCTGAAAATGCCTCAACGTCAAACCCCAGCTTCCCCGTTGACATGTGGAAATAG 999 0.4154 MEANIYLITSLYMQGSEIKVRENMNDFSHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKDIDLYKIEPWDLQELCTLGSEEQNEWYFFSHKDKKYPTGTRTNRTTAAGFWKATGRDKAIYSKLHDLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLQTNEHATPQAKGWVVCRVFKKRLPTMLKLSDHHDSPCWYDDHQVSVMQDMDSPNQTSQPKNSAYHFLQLPLENQKLLQSTSTISPNKMAAYGTEDNHAASIIQQAQQQNLQQVAHDWRALDKFVASQLSQDITKDIFQLKNNSNEEFRDIENHEMKPENASTSNPSFPVDMWK* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2402 332 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 27 318 - -
Lja3g2402 332 Pfam No apical meristem (NAM) protein 31 159 IPR003441 GO:0003677|GO:0006355
Lja3g2402 332 MobiDBLite consensus disorder prediction 311 332 - -
Lja3g2402 332 SUPERFAMILY NAC domain 25 180 IPR036093 GO:0003677|GO:0006355
Lja3g2402 332 Gene3D NAC domain 39 182 IPR036093 GO:0003677|GO:0006355
Lja3g2402 332 ProSiteProfiles NAC domain profile. 30 180 IPR003441 GO:0003677|GO:0006355
Lja3g2402 332 MobiDBLite consensus disorder prediction 316 332 - -
Lja3g2402 332 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 27 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2402 Lja-Chr3 29392831 29394060 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2402 24 332 NAC Transcription Factor Family AT1G12260 52.174 1.16e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g2402 NAM 8.9e-38 No_clan