Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2400 ATGATGTTATTGCCTGCAGATGGCCTGAAAACAATTGAAGGGAGGTGTGCCCGTGGTAAACACAACAGGATTGAAGTAGGAAATCTGATTCTCTTCAATAAGTCTCTGGTGTTTGAAGTTCAGGGAGTAAGGAGGTACGCTTCATTCTTTGACATGTTGGAGGCAGAAAGCCTTGAAAAAGTTCTTCCAGGAGTTGAAAGTGTTGAAGAAGGCAATAAATATAGAGGACTAAAGTATGAGGGAGTTCAAGGCCTTCTAGGTATAATTCATACTACGGGGACAGTTCCTAATGCACTTCCACCACCAAGATCATCTCTATTAGCATCATTTAATTTGCCATGCAATCCAAATGAAATTGCCTTGAGTACTGGAGCTCGTGCATTGGGAAGTGAAGAACAAAATGAATGGTACTTCTTCAGCCATAAAGATAAGAAGTATCCAACAGGAACTCGTACAAATAGAGCAACAGCAGCAGGATTTTGGAAAGCTACTGGAAGAGACAAAGCAATCTATTCTAAGCTGCATGACCTGGTTGGGATGAGGAAAACATTAGTCTTTTATGAAGGCCGAGCACCCAATGGACAAAAATCTGATTGCATCATGCATGAGTATCGCCTTCAAACCAATGAATATGCCACACCACAGGCAAGTTTCAAAATAAAGAACCAGCATATAGTATCCTTAGCTAGATGA 693 0.4098 MMLLPADGLKTIEGRCARGKHNRIEVGNLILFNKSLVFEVQGVRRYASFFDMLEAESLEKVLPGVESVEEGNKYRGLKYEGVQGLLGIIHTTGTVPNALPPPRSSLLASFNLPCNPNEIALSTGARALGSEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKLHDLVGMRKTLVFYEGRAPNGQKSDCIMHEYRLQTNEYATPQASFKIKNQHIVSLAR* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2400 230 Gene3D NAC domain 100 230 IPR036093 GO:0003677|GO:0006355
Lja3g2400 230 SUPERFAMILY NAC domain 130 211 IPR036093 GO:0003677|GO:0006355
Lja3g2400 230 Gene3D Hypothetical protein. 4 90 - -
Lja3g2400 230 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 130 213 - -
Lja3g2400 230 Pfam No apical meristem (NAM) protein 115 206 IPR003441 GO:0003677|GO:0006355
Lja3g2400 230 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 130 213 - -
Lja3g2400 230 ProSiteProfiles NAC domain profile. 73 223 IPR003441 GO:0003677|GO:0006355
Lja3g2400 230 SUPERFAMILY PUA domain-like 7 82 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2400 Lja-Chr3 29372528 29376961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2400 113 215 NAC Transcription Factor Family AT1G62700 73.786 1.04e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g2400 NAM 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2400 - - mtr:MTR_2g099125 174.481