LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g2398	ATGGCAAACACACCCCTTCTCCTCACCACCCTGTTCCTCCTCTCCGCCCTGTATCTCACCACCGCAAACCCCACCAACTTCATCAAATCCTCCTGCAGCACCACCCAATACCCAACTCTCTGCGTCGAATCCCTCTCCGCCTACGCCACCACCATCCAACAAGACCCACACCAGCTCGTCCAAACTGCACTCTCCCTCACCCTCAACAGAACCCAGTCCACCAAAGCCTTCGTCTCAAGATGCAAAAACTTCAGGGGACTCAAACCCAAGGAGTACGCCGCCCTCCACGACTGCGCTGAGGAGATCAGTGACAGCGTTGACAGGCTCAGCCGTTCGTTGAAGGAGCTCAAGATGTGTACGATCAAGGGTGAGGATTTCACATGGCATATCAGCAATGTTGAGACATGGGTTAGCTCTGCTTTGACTGATGAGAGCACTTGCAGTGATGGGTTTGCTGGGAATGCCATGAATGGGAAGATTAAAACTTCTATTAGAGCTAGAATGGTGAATATTGCTCAGGTTACTAGTAATGCTCTTTCACTTGTTAATAATGCAATTATGGGAAATATATTCCTCACACTCTTATTGTTATCTTCAATTTTCTCAATAGCCTCATCCAGAAGAGGTCCTTCCTCCAGCAACATAGATTGGTGGTGCAAACTAACCCCACACCCTGAACCTTGCAAGCACTACATTACTCAAATCAACCCCCATTCCAAAATCAAACACAAAAATGAATTCCGGGGAATGCTTGTACATTTGGCATTAAAACTAGCACTTGGCATGCAAAGGGAAGCACATGTTACTCTACAAAACATGGAGACAAAGAAACACAGAACTGTACATGGTGATTGTTTGAAGCTGTATGGAAACACCATCTTTCATCTCAATCGCACCCATCACAGCCTTCATCTGGAGAAAGGGTCTTCACCAGATGATACACAGACTTGGCTCGCAACATCTCTCACAAATATCAGAACATGTGGAACAGGGGCTGTGGAACTCAATGCTCAAGATTTCATGTTTCCAACAGAGAGCAGCAATGTCACTCAGATGATAAGGAACGGCTTAGCCATCAATGCGGATTTCATGAAATATAAAGAATCAGCGGCTAAAAATTACACCTCGGAAACAGAAAGAACGAAACTGTTGCAGTCTTCTTCCGTAAAGGCAAATTATGTGGTGGCAAAAGATGGTTCAGGAAACTTCAAGACTGTCCAAGGTGCTCTGAATGCAGCTGCGAAGAGAAGATATAAAACAAGGTTTGTGATACATGTGAGGAAAGGGGTGTATAGAGAGAATATTGAGGTTGCTGTGAAGAATGATAACATCATGCTTGTTGGTGATGGGATGAAAAACACCATAATTACCAGTGGCAGAAGTGTTCAAGCAGGTTATACTACGTATAGCTCAGCCACAGCAGGTGAGAGATATGGCCTCCACTTCGTTGCACGAGATATTACCTTCCAAAACACTGCGGGTCCTCAAAAGGGTCAAGCCGTGGCGCTCCGGTCAGCCTCAGACCTCTCAGTCTTCTACCGATGTGCTATATTAGGTTATCAAGACACCCTCATGGTTCATGCACAACGCCAATTTTATAGACAATGCCAAATCTATGGCACCGTAGACTTCATCTTTGGGAACGCCGCAGTGGTATTTCAGAACTGCAAGATTTTCGCAAGAAAGCCTTTAGATGGCCAAGCAAACATGATCACAGCTCAAGGACGAGACGACCCATTCCAGAACACTGGAATCACTATCCACAATTCTGAAATCAGGGCGGCTCCGGACCTCAAGCCTGTTGTTGAGAAGCACAACACCTTCTTGGGCAGGCCCTGGCAACAATACTCAAGAGTGGTGGTCTTGAAAACTTTCATGGACACCTTGGTTAGCCCGTTAGGATGGTCTTCGTGGGATGGTACTGATTTTGCTCTTGACACTTTGTATTATGGAGAGTATGGGAACTCTGGGCCTGGTTCATCTGTGATAAATAGAGTACAGTGGCCTGGGTTTCATGTGATAACAAGCCCCGCTGAAGCATCACGGTTCACCGTTAATGGACTTCTTACCGGCTCCATGTGGTTACGTGAAACAACTGTGCCATTTACCTCTGGTCTTTGA	2121	0.462	MANTPLLLTTLFLLSALYLTTANPTNFIKSSCSTTQYPTLCVESLSAYATTIQQDPHQLVQTALSLTLNRTQSTKAFVSRCKNFRGLKPKEYAALHDCAEEISDSVDRLSRSLKELKMCTIKGEDFTWHISNVETWVSSALTDESTCSDGFAGNAMNGKIKTSIRARMVNIAQVTSNALSLVNNAIMGNIFLTLLLLSSIFSIASSRRGPSSSNIDWWCKLTPHPEPCKHYITQINPHSKIKHKNEFRGMLVHLALKLALGMQREAHVTLQNMETKKHRTVHGDCLKLYGNTIFHLNRTHHSLHLEKGSSPDDTQTWLATSLTNIRTCGTGAVELNAQDFMFPTESSNVTQMIRNGLAINADFMKYKESAAKNYTSETERTKLLQSSSVKANYVVAKDGSGNFKTVQGALNAAAKRRYKTRFVIHVRKGVYRENIEVAVKNDNIMLVGDGMKNTIITSGRSVQAGYTTYSSATAGERYGLHFVARDITFQNTAGPQKGQAVALRSASDLSVFYRCAILGYQDTLMVHAQRQFYRQCQIYGTVDFIFGNAAVVFQNCKIFARKPLDGQANMITAQGRDDPFQNTGITIHNSEIRAAPDLKPVVEKHNTFLGRPWQQYSRVVVLKTFMDTLVSPLGWSSWDGTDFALDTLYYGEYGNSGPGSSVINRVQWPGFHVITSPAEASRFTVNGLLTGSMWLRETTVPFTSGL*	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g2398	706	Pfam	Plant invertase/pectin methylesterase inhibitor	26	181	IPR006501	GO:0004857
	Lja3g2398	706	Pfam	Plant invertase/pectin methylesterase inhibitor	214	359	IPR006501	GO:0004857
	Lja3g2398	706	Gene3D	-	385	706	IPR012334	-
	Lja3g2398	706	CDD	PMEI-like_3	217	365	-	-
	Lja3g2398	706	CDD	PMEI-like_3	30	184	-	-
	Lja3g2398	706	SUPERFAMILY	Pectin lyase-like	388	705	IPR011050	-
	Lja3g2398	706	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	26	184	IPR035513	-
	Lja3g2398	706	SMART	PMEI_2	23	181	IPR006501	GO:0004857
	Lja3g2398	706	SMART	PMEI_2	210	359	IPR006501	GO:0004857
	Lja3g2398	706	Gene3D	Invertase/pectin methylesterase inhibitor family protein	210	363	IPR035513	-
	Lja3g2398	706	Gene3D	Invertase/pectin methylesterase inhibitor family protein	23	185	IPR035513	-
	Lja3g2398	706	PANTHER	PECTINESTERASE	186	705	-	-
	Lja3g2398	706	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	213	363	IPR035513	-
	Lja3g2398	706	PANTHER	PECTINESTERASE	186	705	-	-
	Lja3g2398	706	Pfam	Pectinesterase	393	691	IPR000070	GO:0030599\|GO:0042545
	Lja3g2398	706	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	190	361	IPR006501	GO:0004857
	Lja3g2398	706	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	9	184	IPR006501	GO:0004857
	Lja3g2398	706	ProSitePatterns	Pectinesterase signature 2.	538	547	IPR033131	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g2398	Lja-Chr3	29308179	29337052	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g2398	218	706	Carbohydrate Esterase	AT5G51490	54.291	0.0	555

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g2398	K01051		-	gmx:100806133	735.332