Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2393 ATGATGAGTGTGCCTGTGTGGACGAAGTTAAGAACATTGGGGAATGGTTCCTCTGCAACTGTTTACCTTGCACTTGTCATTCCGTCACAGGGAAAAAGAAAGGTTGTAGCTGTGAAGAGTTCAAGGCCATTCTTGAGTGATCCATTGCAAAGAGAAGAAAGAATCATGAAATCATTCACTGGTTGTGAAGAGATCATTCAATGCTATTTTGGCCAACCCACTTTGGAGAAAGGTCATTTGACCTACAACCTCTTCATGGAGTTTACACCTTACGGTTCTCTTGGAGATTTAATCAGGAAGAGGCCAATCTTTGAATACGAAGCAAGAGTCTACACCCGCATGCTTCTCAAAGGACTTTCTCGCATTCATCGCGTTGGTGTTGTTCATTGCGATCTCAAACCAGACAACATCCTTATCTTTCCTTCATCTAAGGGTGATATTGTGAAATATCAAGTGAAGATTGCGGATTTTGGATTGTCCAAGACTAGAGAAGAGGTAGTCAATGCTGAATGTTGGAACCTAAAGTTCAGAGGGACACCACTTTACATGTCGCCGGAATCGGTTATGGGTCAGATTGAATCACCTCTAGATATCTGGTCCCTCGGGTGCATTGTAATCGAGATGATAACTGGGATACCGGCATGGAAGAATATACAAACCAGTGAGGAGGTGATGTTAAAGCTTGCATTCGTTAAAGAACAACGAATGATACCAAATGGAGTAAGCTCTGATTGTAGAGACTTCTTGAGCAAGTGCTTTGTGATTGATCCAAACCAGAGATGGACAGCTGACATGCTTCTCAATCATCCTTTTTCCAGCCTATGA 825 0.4255 MMSVPVWTKLRTLGNGSSATVYLALVIPSQGKRKVVAVKSSRPFLSDPLQREERIMKSFTGCEEIIQCYFGQPTLEKGHLTYNLFMEFTPYGSLGDLIRKRPIFEYEARVYTRMLLKGLSRIHRVGVVHCDLKPDNILIFPSSKGDIVKYQVKIADFGLSKTREEVVNAECWNLKFRGTPLYMSPESVMGQIESPLDIWSLGCIVIEMITGIPAWKNIQTSEEVMLKLAFVKEQRMIPNGVSSDCRDFLSKCFVIDPNQRWTADMLLNHPFSSL* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2393 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Lja3g2393 274 SUPERFAMILY Protein kinase-like (PK-like) 7 271 IPR011009 -
Lja3g2393 274 SMART serkin_6 7 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2393 274 ProSitePatterns Protein kinases ATP-binding region signature. 13 39 IPR017441 GO:0005524
Lja3g2393 274 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 7 271 - -
Lja3g2393 274 ProSiteProfiles Protein kinase domain profile. 7 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2393 274 Gene3D Transferase(Phosphotransferase) domain 1 4 274 - -
Lja3g2393 274 CDD STKc_MAPKKK 7 271 - -
Lja3g2393 274 Pfam Protein kinase domain 8 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2393 274 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2393 Lja-Chr3 29243610 29244434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2393 7 271 MAP Kinase Kinase Kinase AT4G36950 41.877 6.74e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja3g2393 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2393 - - gmx:102667952 348.591