Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2392 ATGAGTGTGCCTGGGTGGATGAAGTTAAGAACATTGGGGAATGGTTCCTCTGCAGTTGTTTACCTTGCAGTTGTCATTCCGTCACAAGGAAAAAGAAATGTGGTAGCTGTGAAGAGTTCAAGGCCATTCTTGAGTGGTCCACTGCAAAGAGAAGAAAGGATCATGAAATCATTCATTGGTTGTGAAGAAATCATTCAAAGCTATTTTGGCCAACACACTTTGGAGAAAGGTCACTTCACCTACAACCTCTTCATGGAGTTTACACCTTACGGTTCCCTTGGAGATTTAATCAGGAAGAGGCCAATCTTTGAATACGAAGCAAGAGTCTACACCCGCATGCTTCTCAAAGGACTTTCTCGCATTCATCGCGTTGGAGTTGTTCATTGCGATCTGAAACCCGACAACATCCTTATCTTTCCTTCATCTAAGGGTGATATTGTGAAATATCAAGTGAAGATTGCGGATTTTGGATTGTCCAAGACTAGAGAAGAGGTAGTCAATGCTGAATGTTGGAACCTAAAGTTCAGAGGGACACCGCTTTACATGTCGCCGGAGTCAGTTATGGGTCAGATTGAATCACCTTTAGATATCTGGTCCCTCGGGTGCATAGTAATCGAGATGATAACGGGGATACCGGCATGGAAGAATATACAAACTAGTGAGGAGGTGATGTTAAAGCTTGCATTCTTTACAGAACAACGAATGATACCAAATGGAGTAAGCTCTGATTGTAGAGACTTCTTGAGCAAGTGCTTTGTGATTGATCCAAACCAGAGATGGACAGCTGACATGCTTCTCAATCATCCTTTTTCCTGCCTATGA 822 0.4282 MSVPGWMKLRTLGNGSSAVVYLAVVIPSQGKRNVVAVKSSRPFLSGPLQREERIMKSFIGCEEIIQSYFGQHTLEKGHFTYNLFMEFTPYGSLGDLIRKRPIFEYEARVYTRMLLKGLSRIHRVGVVHCDLKPDNILIFPSSKGDIVKYQVKIADFGLSKTREEVVNAECWNLKFRGTPLYMSPESVMGQIESPLDIWSLGCIVIEMITGIPAWKNIQTSEEVMLKLAFFTEQRMIPNGVSSDCRDFLSKCFVIDPNQRWTADMLLNHPFSCL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2392 273 ProSitePatterns Protein kinases ATP-binding region signature. 12 38 IPR017441 GO:0005524
Lja3g2392 273 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 6 270 - -
Lja3g2392 273 Pfam Protein kinase domain 7 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2392 273 SUPERFAMILY Protein kinase-like (PK-like) 5 270 IPR011009 -
Lja3g2392 273 SMART serkin_6 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2392 273 Gene3D Transferase(Phosphotransferase) domain 1 4 273 - -
Lja3g2392 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lja3g2392 273 CDD STKc_MAPKKK 6 270 - -
Lja3g2392 273 ProSiteProfiles Protein kinase domain profile. 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2392 273 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 6 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2392 Lja-Chr3 29224352 29225173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2392 6 270 MAP Kinase Kinase Kinase AT4G36950 41.155 3.09e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja3g2392 Pkinase 4.9e-47 CL0016