Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2383 ATGGCTGGGATTGATGATAATGTTGCCCTTACTGGTGATTGGGGTCTTCATAGCCCAAGTCCGAGGACCCTTTTTTCTAGAATGCTCGAGGAAGATAATGTAACAAGATCAATCTCTGAACACCCTGGAAGTGGTAGAACCGGGGATCTCTTTCCAGGAACTCATGACTCCTCTGAGACAGGGAGAGCGAACATGAGAGAGAGCTCGCAAGATGGTAATTCTGGTGTGCAATTGACTGATCCGAGTTTTCAGACTGAGCAGAAGTCGAACTCGAACTCACGGGGTGGTCTTGTTGAAAGAATGGCGGCTAGAGCTGGGTTTAATGCTCCGAGGTTGAATACAGAAAGCATTAGATCTACTGACCTTTCGCTTAATTCCGACATTCGGTCTCCTTACTTGACCATACCACCTGGTCTCAGTCCCACCACACTCTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCATCTCCAACAACAGGAAAGTTTCTATTTACTTCAAATGGCAACATCCGATGCTCAGAATTATCATCTGATGCTCCAGAAAAACGTAAAGATAATGGCTTTGATGATTTCTATGCATCATCCTTTGCCTTCAAGCCTACAACAGATTCAGGATCCTCTTTTTATCATGATGCTGGAAGAAAGACAAATCAAACTACACTTCCTCAACAATCCCTTCCTGGTATTGAAGCTTCAGTTCAGTCAAGACCTTCTTTTCAATCTCAAAGTGTCGATGCAGTCAAAGTTCAAACTGAGAACAAAAGTGGCCTGGAACATTCTGCACCACTTGAAGAGCAAGCAGATGAAGAGGGAGATCAGAGAGTCAATGTAGACACGGTGGCTGCTGGTGTTGGTGGCGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGCGATTACCCACGAAGTTACTACAAGTGTACACATCCGAATTGTCAGGTTAAGAAGAAAGTAGAACGTTCTCATGAGGGCCACATAACAGAGATTATCTACAAGGGAGCGCACAACCATCCAAAACCTCCTCCGAATCGCCGGTCATCGGGCCTAGGGTCAGTTAACCCTCATACTGATATGCAAGTGGACAATCCTGAACATGTTGAGCCACAGCGTGTCGGTGAAGGTGACCTGGGCTGGGCTGATGCACAAAAGGGAAATATTGCTGGAGCTGGTAACTGGAAGCAGGACAACCTTGAAGTGACATCATCAGCATCTGTTGGCCCTGAGTATGGCAACCAGTCCACCAACTTGCAGACTCAAAATGGAACTAACTTAGACTCGGGAGAAGCAGTGGATGGCTCGTCTACTTTTTCTAATGAAGAAGAAGAAGATGATCAAGGCACTCATGGTAGTGTATCTTTAGGTTATGATGGGGAAGGAGATGAATCAGAGTCTAAAAGAAGGAAACTTGAATCATATGCAACAGAGTTGAGTGGAGCTACCAGAGCTATTCGTGAGCCTAGAGTTGTTGTACAGACTACTAGCGAAGTAGATATCCTCGATGATGGTTACCGATGGCGGAAATATGGGCAAAAAGTTGTAAAGGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAACGCTGGGTGCATGGTGAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACGACCTATGAGGGAAAGCACAACCATGATGTCCCTGCTGCTCGCGCTAGCAGTCACGTCAATGCCAATGCGTCTAACAATCTTCACGGGCAAGCTTCTGGTGTTCTTCAAAGCCATATTCATAGACCTGAACCATCCCAAGTTCACAACAGCATGGGAAGACTTGAGAGGCCTTCCCTTGGCTCATTCAACCTTCCTGGGAGGCAGCACCTAGGACCTCCCCATGGCTTCTCCTTTGGTATGAATCAACCTATGCTCTCGAACATGGCAATTCAGTCAATGCCTTTTCATCCATTTTCGGCACAACAGCGCCCTGCAAATGAAATGGGGTTCATGTTGCCAAAGGGAGAACCAAATGTGGAGCCTATGCCTGAACGTGGTGGCCTTAACATGCCTAGTCGAGACTCATCAGTATATCAGGAAATGATGAGTCGCATGCCTCTTGGACCTCATAGATAA 2133 0.4627 MAGIDDNVALTGDWGLHSPSPRTLFSRMLEEDNVTRSISEHPGSGRTGDLFPGTHDSSETGRANMRESSQDGNSGVQLTDPSFQTEQKSNSNSRGGLVERMAARAGFNAPRLNTESIRSTDLSLNSDIRSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFTSNGNIRCSELSSDAPEKRKDNGFDDFYASSFAFKPTTDSGSSFYHDAGRKTNQTTLPQQSLPGIEASVQSRPSFQSQSVDAVKVQTENKSGLEHSAPLEEQADEEGDQRVNVDTVAAGVGGAPSEDGYNWRKYGQKQVKGSDYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPPPNRRSSGLGSVNPHTDMQVDNPEHVEPQRVGEGDLGWADAQKGNIAGAGNWKQDNLEVTSSASVGPEYGNQSTNLQTQNGTNLDSGEAVDGSSTFSNEEEEDDQGTHGSVSLGYDGEGDESESKRRKLESYATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCMVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNNLHGQASGVLQSHIHRPEPSQVHNSMGRLERPSLGSFNLPGRQHLGPPHGFSFGMNQPMLSNMAIQSMPFHPFSAQQRPANEMGFMLPKGEPNVEPMPERGGLNMPSRDSSVYQEMMSRMPLGPHR* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2383 710 MobiDBLite consensus disorder prediction 51 96 - -
Lja3g2383 710 MobiDBLite consensus disorder prediction 342 484 - -
Lja3g2383 710 MobiDBLite consensus disorder prediction 405 445 - -
Lja3g2383 710 Gene3D WRKY domain 497 563 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g2383 710 Gene3D WRKY domain 280 352 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g2383 710 ProSiteProfiles WRKY domain profile. 505 570 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g2383 710 MobiDBLite consensus disorder prediction 237 275 - -
Lja3g2383 710 MobiDBLite consensus disorder prediction 237 260 - -
Lja3g2383 710 MobiDBLite consensus disorder prediction 34 96 - -
Lja3g2383 710 SMART WRKY_cls 292 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g2383 710 SMART WRKY_cls 510 569 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g2383 710 Coils Coil 710 710 - -
Lja3g2383 710 MobiDBLite consensus disorder prediction 469 483 - -
Lja3g2383 710 SUPERFAMILY WRKY DNA-binding domain 502 570 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g2383 710 SUPERFAMILY WRKY DNA-binding domain 291 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g2383 710 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 108 646 IPR044810 GO:0003700
Lja3g2383 710 ProSiteProfiles WRKY domain profile. 293 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g2383 710 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 108 646 - -
Lja3g2383 710 MobiDBLite consensus disorder prediction 261 275 - -
Lja3g2383 710 Pfam WRKY DNA -binding domain 511 567 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g2383 710 Pfam WRKY DNA -binding domain 293 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2383 Lja-Chr3 29088721 29092421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2383 1 705 WRKY Transcription Factor Family AT5G56270 49.072 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g2383 WRKY 2.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2383 K18835 - gmx:100127395 1139.79