Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g2372 | ATGGAAGAAAGCAGCAGGGATTTTTCCAACACCCAATTTGGGTCTTCTTTTGATCCAACTTCTCCTCTCTCCAACACCAAACCCATCACTCCCTCCCTATTCAAATCCAAACCTGTTTTCTTACATGAATGGTGGCTCGCAAAGCCGCAAAACGAACGTGGGGGTTTAGCTGTTGGCGGCGTTGCTTCGATGGAGAGAGAGAGGGTGTTTTTGTCAGCAGTGATTGCAAAGAGACATGAGGCTAATGTCCTAGAGACTGAAGATGGCATCACAGTTGTTTTCCGTGGTTTCATCAACACTAATCGGACATGTGAAAATGGTTTTCCATCTGAGGTATATCGCCGCTTCTTGATTGGATTTCCCCACGATTGGAAAAAGTATTCAGCTCACAATTTAGGTGATGAATATATTGATGGAGTGTCAGGTGTTGCAGTTGAAAGCCAAACTGGAAATCCTGTTTCTTGTACAGGATTTTCTGGAAGAAGCATGGTTGAATCTCCAAAAACCCCAATTTTTTTGGAAAAAGACCAATCAGCAAGTGACCCCAAGGAGAAGCAACGAAATAGGCAAGAGATTATAGAGGACAGAGATGATTCCTGTAGTAGGAGGGTAACTAGAAGCATTTCCAAAAGAGGTCACACAATGCTTGTAAAAGATAAGAAGGCTAAAGTAACCTGTGTTAATTCTCCTGTTAGAAGATCTCCCAGACTATGTAATTATAGAAAATAA | 729 | 0.4198 | MEESSRDFSNTQFGSSFDPTSPLSNTKPITPSLFKSKPVFLHEWWLAKPQNERGGLAVGGVASMERERVFLSAVIAKRHEANVLETEDGITVVFRGFINTNRTCENGFPSEVYRRFLIGFPHDWKKYSAHNLGDEYIDGVSGVAVESQTGNPVSCTGFSGRSMVESPKTPIFLEKDQSASDPKEKQRNRQEIIEDRDDSCSRRVTRSISKRGHTMLVKDKKAKVTCVNSPVRRSPRLCNYRK* | 243 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g2372 | 242 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Lja3g2372 | 242 | Pfam | SANTA (SANT Associated) | 39 | 127 | IPR015216 | - | |
| Lja3g2372 | 242 | MobiDBLite | consensus disorder prediction | 174 | 206 | - | - | |
| Lja3g2372 | 242 | PANTHER | TRANSCRIPTION REGULATOR OTHERS FAMILY-RELATED | 139 | 242 | - | - | |
| Lja3g2372 | 242 | PANTHER | TRANSCRIPTION REGULATOR OTHERS FAMILY-RELATED | 25 | 141 | - | - | |
| Lja3g2372 | 242 | MobiDBLite | consensus disorder prediction | 177 | 205 | - | - | |
| Lja3g2372 | 242 | PANTHER | MIS18-BINDING PROTEIN 1 | 139 | 242 | IPR039110 | - | |
| Lja3g2372 | 242 | PANTHER | MIS18-BINDING PROTEIN 1 | 25 | 141 | IPR039110 | - | |
| Lja3g2372 | 242 | MobiDBLite | consensus disorder prediction | 7 | 24 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g2372 | Lja-Chr3 | 28848656 | 28851426 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Lja3g2372 | SANTA | 1.2e-25 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja3g2372 | - | - | lja:Lj3g3v1932910.1 | 380.948 |