Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2371 ATGACAACAACAAGTGACTCAGGAACGCAGCAACAACAACAACAACAACATCAACATCATCAGCTTCAGAATGTTGGAAACGGAAATGCCAACCCTTACCCTCCGCCAACCGCTCTCTACCAGGACCTCACTCGTGATGCCAATCTCTTCTGGGAGAACCTTCAATCTTTTCACAAATCATTCGGCACCAAATTTAAGGTTCCTACTATAGGAGGAAAGCCGCTAGATCTATATCGCCTTTTTATAGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTACTTGACGATCGTAAATGGAAGGAAGTGATTCTGGCTTTTAAGTTCCGAGATACCATAACCAGCGCATCATTTATGGTGCGCAGGTACTATTTATCGTTGCTTTATCACTTTGAGCAAGTATATTATTTTCGGAAGCAAGTCCCTCCTTCCTCAACACCTGACCCTGGCAATAGGAGCCTTGCCAATAGCTCCACACCCATTAGGGAAGGTGCTGCTGTGAATGATATACCTGTTCAGGTTAGTCCAGCACAGACACCTGGTTCTGTGGTGCCTGGAACAATTGATGGGAACCTAAATGCAGTTAGTCCAGTACCAACACCTGGTTCTGTGGTGCCTGGAACAATTGATGGGAAATTTGATGGTGGGTATATAGTTACAGTGAGCCTGGGTTCTGAACAGGTGAAAGGTATCCTGTATCATGTTCCTGACAATGTGTCTCAGAGTTCTTATGCTGAAGGCATGCCTAGTTCGCGAAAGAAATCAAAATCGGCATTACGTGATCCATCTCTACCAAAGTCGAACAGGAGTGGTTACAATTTCTTCTTTGCTGAGAATTATGCCAGGCTAAGGCCCTCATTTCAAGGGCAAGAGAAAGAAATTAGTAAGAGGATTGGGTTTCTGTGGAGCAATCTGTCTGAAGCAGAAAGACAGGTTTATCAGGATAAAGCACTGAGAGATAAGGAAAGATACCAGACTGGAATGCAAGAGTACAAATCCAATCATCCAGCTCCTCAGTAG 1017 0.4425 MTTTSDSGTQQQQQQQHQHHQLQNVGNGNANPYPPPTALYQDLTRDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDDRKWKEVILAFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSSTPDPGNRSLANSSTPIREGAAVNDIPVQVSPAQTPGSVVPGTIDGNLNAVSPVPTPGSVVPGTIDGKFDGGYIVTVSLGSEQVKGILYHVPDNVSQSSYAEGMPSSRKKSKSALRDPSLPKSNRSGYNFFFAENYARLRPSFQGQEKEISKRIGFLWSNLSEAERQVYQDKALRDKERYQTGMQEYKSNHPAPQ* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2371 338 Pfam HMG (high mobility group) box 264 331 IPR009071 -
Lja3g2371 338 SMART bright_3 45 136 IPR001606 GO:0003677
Lja3g2371 338 MobiDBLite consensus disorder prediction 1 37 - -
Lja3g2371 338 Gene3D High mobility group box domain 248 337 IPR036910 -
Lja3g2371 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 336 - -
Lja3g2371 338 Gene3D - 9 145 IPR036431 GO:0003677
Lja3g2371 338 SMART ARID_2 41 131 - -
Lja3g2371 338 MobiDBLite consensus disorder prediction 240 264 - -
Lja3g2371 338 CDD HMGB-UBF_HMG-box 264 328 - -
Lja3g2371 338 SUPERFAMILY HMG-box 250 335 IPR036910 -
Lja3g2371 338 MobiDBLite consensus disorder prediction 1 31 - -
Lja3g2371 338 ProSiteProfiles ARID domain profile. 44 135 IPR001606 GO:0003677
Lja3g2371 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 12 336 - -
Lja3g2371 338 Pfam ARID/BRIGHT DNA binding domain 48 131 IPR001606 GO:0003677
Lja3g2371 338 SMART hmgende2 263 332 IPR009071 -
Lja3g2371 338 MobiDBLite consensus disorder prediction 315 338 - -
Lja3g2371 338 SUPERFAMILY ARID-like 42 146 IPR036431 GO:0003677
Lja3g2371 338 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 264 331 IPR009071 -
Lja3g2371 338 CDD ARID_HMGB9-like 46 131 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2371 Lja-Chr3 28833380 28838293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2371 38 336 ARID Transcription Factor Family AT3G13350 49.675 8.47e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja3g2371 ARID 2.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2371 - - lja:Lj3g3v1933050.1 439.884