Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2367 ATGTCTTTTGTTCTGAGGAAACTGTGGGAAATGATGATGCTGCCGGCAAACAACAACAACAACCCATCATCATCATGGACCACCGGAGGAGGAGTTTTGTCGCGTGCGGATTTGGGTGTGTTGGAGAAGCTGCCATGGGACGTGTTGATGCAGATTCTGAAGCTTCTGGATCCCAAAGAGGCTGCGAAAGTGTGCGTGGTTTGCAAGGTTTTGAGATCTTTGGTTTCTGATGATAATCGCCTCTGGCTTCACTTCCTTCAGACCCATCAGGCTGATCCTTCTTGGGATTCTGTCTTCTTTGCTGAGACCACTTTGGCTTCTGGCTACCCTCTTCCTTGTACTGAAGATTTGCTCCTCAATTACAGTTCCTTCATTGGCCACAGGCCCCAGCTGTCATTCAAGCATATATATGGCCAGAGAGCACAAGTTCCTGGTGCTATTATCATCGATGGTGGTTCTGGTTATTGCAAATTTGGCTGGAGCAAATATGCTTGTCCATCAGGGCGATCAGCCACATTTTTGGAATTTGGCAACATTGAGTCACCTATGTATACTAGGCTTCGTCATTTTTATGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCGATACCAATAGTCCATTATGATGATACTGAATCAGCCAAAGCATCAAGACGACAACTTAAAGAAGCAATTTATACTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAGCCAGGCAACTCTAGCTCTGTACGCTGCAAAACGAACTTCTGGAATAGCTGTTAATATAGGCTTTCAAGTCATATCGGTAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCTCTTAAACTTACAGAATTTCTTAAGGAGAAGATGCAACTGAACAACCTGAATTTTCAATCATTGTACACTGTTCGCAAATTGAAAGAGAACCTATGCTATGTTGCTCTGGATTATGAAGCTGAGCTTTCAAAAGATACAACAGCATCATTTGAAGCTATAGGAGATGGATGGTTTACACTTTCAAAAGAGCGGTTTCAGACGGGAGAGATCTTATTCCAGCCTCATCTCGCTGGAGTGCAAGCCATGGGTTTGCACCAGGCCATAGCTCTTTGTATGGACCGTTGCCATGCTGCAAACTTACCCGCTGACAGTGATTGGTACAAGACTGTAGTTTTATCAGGGGGGACAGCATGTTTACCAGGCTTGGCAGAAAGGATAGACAAGGAACTTAATGCCTTACTTCCTCCATACATGTCCAATGGAATTAGAGTCGTACCTCCTCCTTACGGTGCCGATACTCCATGGTTTGGAGCGAAGATTATTGGCAATTTGAGCACCTTTCCTGGTCCTTGGTGTGTGGAAAAAAAGCTGTTTCGCCAGAAGCCTAGACTCAACCTCATATGGTGA 1455 0.4433 MSFVLRKLWEMMMLPANNNNNPSSSWTTGGGVLSRADLGVLEKLPWDVLMQILKLLDPKEAAKVCVVCKVLRSLVSDDNRLWLHFLQTHQADPSWDSVFFAETTLASGYPLPCTEDLLLNYSSFIGHRPQLSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFYATIYNRMQVKPNKQPVIVSIPIVHYDDTESAKASRRQLKEAIYTSLFDMNVPAVCAVSQATLALYAAKRTSGIAVNIGFQVISVVPILNGKVMRKVGVEVVGLGALKLTEFLKEKMQLNNLNFQSLYTVRKLKENLCYVALDYEAELSKDTTASFEAIGDGWFTLSKERFQTGEILFQPHLAGVQAMGLHQAIALCMDRCHAANLPADSDWYKTVVLSGGTACLPGLAERIDKELNALLPPYMSNGIRVVPPPYGADTPWFGAKIIGNLSTFPGPWCVEKKLFRQKPRLNLIW* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2367 484 Pfam Actin 192 468 IPR004000 -
Lja3g2367 484 SUPERFAMILY Actin-like ATPase domain 260 468 IPR043129 -
Lja3g2367 484 Gene3D - 190 469 - -
Lja3g2367 484 Pfam F-box-like 42 83 IPR001810 GO:0005515
Lja3g2367 484 ProSiteProfiles F-box domain profile. 38 85 IPR001810 GO:0005515
Lja3g2367 484 PANTHER MACRONUCLEAR ACTIN 97 481 - -
Lja3g2367 484 Gene3D - 32 109 - -
Lja3g2367 484 SUPERFAMILY Actin-like ATPase domain 145 266 IPR043129 -
Lja3g2367 484 SUPERFAMILY F-box domain 38 96 IPR036047 GO:0005515
Lja3g2367 484 SMART fbox_2 44 84 IPR001810 GO:0005515
Lja3g2367 484 CDD NBD_sugar-kinase_HSP70_actin 147 291 - -
Lja3g2367 484 Gene3D - 251 449 - -
Lja3g2367 484 Gene3D Actin; Chain A, domain 4 294 377 - -
Lja3g2367 484 PANTHER ACTIN 97 481 IPR004000 -
Lja3g2367 484 SMART actin_3 144 474 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2367 Lja-Chr3 28780793 28790032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2367 190 480 Cytoskeleton Gene Families AT3G12110 33.000 2.26e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2367 K16616 - gmx:100791973 770.77