Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2357 ATGGAATCCCAATTAGATGATGGAAATGACGGAATGGAAGTTTCTGAGGATGTGGGTTTGAGTACATATGAAGTCGAGATACATCGAGAAACTTATGAAGGGGATCCAAATGAGGGGTGTAGGGTGCTAGAGAGTACTTCTGGTGGAGAATTGGGTGTCTCTGATGACCATGCTATCCAGGAACCGTATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGGTATTCTATGACGAATATGCCCGTCATGTTGGATTTGTCATGCGTGTGATGTCTTGCCGACGCTCAGAAAGAGATGGTAGGATTCTTGCCCGTAGGCTTGGATGTAATAAGGAGGGTCATTGTCTCAACATCCGAGGGAAATTAGGGTCAATTCGCAGACCAAGAGCCAGCACAAGGGAAGGTTGTAAGGCGATGATTCATATCAAATATGACAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCACTAGTGGTCTCTCCACGTGAAGCACGCCAGACAATGGATGAGAAGGATAAAAAAATTCAGGAATTAACAGCGGAGATTCGGATAAAAAAACGGTTGTGTGCGACATATCAAGAGCAGTTAAGTTCTTTTATGAAAATTGTTGAAGAGCACAGTGACAAGCTGTCTGTGAAAATTCATCACATAGTTAATAATCTTAAGGAATTTGAACCCATAGAAGAGCTTTTGCACCAGACGTAG 726 0.4229 MESQLDDGNDGMEVSEDVGLSTYEVEIHRETYEGDPNEGCRVLESTSGGELGVSDDHAIQEPYEGMEFESEDAAKVFYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCLNIRGKLGSIRRPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLKEFEPIEELLHQT* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2357 241 Coils Coil 175 202 - -
Lja3g2357 241 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 32 240 - -
Lja3g2357 241 Pfam FAR1 DNA-binding domain 77 165 IPR004330 -
Lja3g2357 241 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 32 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2357 Lja-Chr3 28647729 28653729 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g2357 FAR1 8.7e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2357 - - gmx:100787741 436.802