Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2345 ATGGAGCGGGAAGGTCCTCCATTGAACGATCTCTGCTCAGTGTGCCATGGAAACTTCCACATTCCATGCCAAGCAAATTGCTCTCACTGGTTCTGCGCCAACTGCATCATGCTGGTGTGGAACCATGGATCTGCGATTCAACCATGCAAATGCCCCCTCTGTCGCCGCCCCATTACGCTCCTGGTTCCTACCGAACAAGACTCCGCGTCGCACCGCCAGGAACCTGAAGTCGCTCACGTTCTCTCCCAAATTCAAACCTACAATCGCTTCTTCGGTGCCCGTTCCTCTGGTCCCCTTCAAAGAATGCTGGATCTCCCTTTTCTGCTGCGAAGGCTTGCTCGGGAATTCTTGGACCCTCAGAGATCACTTCCTCTTGTCATCAGAGCTCGTGTTTATATTGCAATGATAATAAGTGCTATATACGTCTTTAGCCCCATTGACATCATTCCTGAAGGGATATGGGGAGTAGTTGGTCTCCTGGATGATCTCCTTATTGTGCTCATCTTCTTCTTGCATGTTGCTGCCCTTTATAGATCAGTGCTTTACCGCCGTCATGGTGGTTCCTGA 567 0.5044 MEREGPPLNDLCSVCHGNFHIPCQANCSHWFCANCIMLVWNHGSAIQPCKCPLCRRPITLLVPTEQDSASHRQEPEVAHVLSQIQTYNRFFGARSSGPLQRMLDLPFLLRRLAREFLDPQRSLPLVIRARVYIAMIISAIYVFSPIDIIPEGIWGVVGLLDDLLIVLIFFLHVAALYRSVLYRRHGGS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2345 188 Pfam Protein of unknown function (DUF1232) 133 167 IPR010652 -
Lja3g2345 188 ProSiteProfiles Zinc finger RING-type profile. 12 55 IPR001841 -
Lja3g2345 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 104 IPR013083 -
Lja3g2345 188 PANTHER BNAC07G13660D PROTEIN 7 188 - -
Lja3g2345 188 SUPERFAMILY RING/U-box 11 64 - -
Lja3g2345 188 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Lja3g2345 188 PANTHER UNCHARACTERIZED 7 188 IPR038896 GO:0061630
Lja3g2345 188 SMART ring_2 12 54 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2345 37 188 C3H Transcription Factor Family AT1G72175 73.026 7.19e-64 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2345 K15707 - pvy:116125921 278.87