Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2342 ATGGCGGCCTCATCATCATCATCTAAATCTGATATGGTGTTTACGGTGCGAAGGCGTGAGCCGGAGCTTGTTGGTCCAGCTGAAGCGACACCTCGTGAGGTGAAGCTTCTTTCAGACATTGATGACCAAGATGGCCTACGGTTCCAAATTCCAGTGGCACAGTTCTATCGCTACAATCCATCTATGGCAGGGAAGGACCCTGTTGATGCCATTAGAAAAGCATTGGCCAAAACACTTGTGTTTTACTATCCCTTTGCAGGTAGGCTAAGGGAAGGGCCTGGTAGGAAACTCATGGTGGATTGCACTGCAGAAGGTGTTTTATTCATTGAAGCCGATGCAGATGTCACTCTTAACGAATTTGGTGATAATCTTCAGACTCCCTTCCCATGCATGGAAGAGCTCCTGTATGAAGTTCCTGGATCTGACGAAATGCTCAACACACCCTTGCTGCTTATACAAGTAACGCGCCTCAAGTGCGGTGGCTTCATTTTCGCTATTCGATTAAACCACACCATGTGTGACGCCATTGGTTTGGTCCAATTTTTGAGTGCCGTAGGAGAAATTGCTCGTGGGATGCCCCAACCTTCCATCCTCCCTGTGTGGCGTAGAGAGATTCTAAGTGCAAGGGACCCACCAAGGGTGACATGCACTCATCCTGAATACGATGAACAAACACCTTACAACAAGGAAATTTCCATCCCCCTAGATGACATGGTCCACAAGTCTTTCTTCTTTGGTCCCACTGAGCTAGCTACAATTCGTAGTTTCCTTCCTTCCCACCAACTTCGCTGCACAAATTTTGAAGTTCTCACTGCATTTGTTTGGCGTTGCCGCACAGTAGCATTGCAACCAAGTAGTGATGAGGAGGTTCGCATACTCTGCATAGTCAATGCACGTGCCAAGCTTGACTCTCCATTACCAACCGGTTACTATGGCAATGCTTTTGCAATTTCTCCCGCGATTACCACTGCTGGGAAGCTATGTGAAAATCCATTGGGATATGCAGTAGATTTAGTGAGGAAAGCAAAAGCTAATATCACTAGGGAGTATATGCATTCATTGGCAGATTTAATGGCCATTAAGGGACGACCACACTTCAGTATGGAAAAATCGTTTCTTGTGTCAGATTTGAAGCTTGCTGGGTTTAGGCGAGTGGACTTTGGGTGGGGAAATGCTATTTATGGAGGCCTTGCCAAGGGAGGAATTGGGCCAATACCTAGTTTAGCAAGCTTTAACGTTCCCTTTAAAAATGATAAAGGTGAGGAAGGTTTACTAACACCAATGTGTTTACCATCTAAAGCCATGGAGAGGTTCATAAAAGAGTTGGATAATGTGCTTAAGAAACATATCCAACCTGCTAGGGGAGGTCTAAATTCTGGTTTTATCGTTTCTGCATTGTAG 1401 0.4554 MAASSSSSKSDMVFTVRRREPELVGPAEATPREVKLLSDIDDQDGLRFQIPVAQFYRYNPSMAGKDPVDAIRKALAKTLVFYYPFAGRLREGPGRKLMVDCTAEGVLFIEADADVTLNEFGDNLQTPFPCMEELLYEVPGSDEMLNTPLLLIQVTRLKCGGFIFAIRLNHTMCDAIGLVQFLSAVGEIARGMPQPSILPVWRREILSARDPPRVTCTHPEYDEQTPYNKEISIPLDDMVHKSFFFGPTELATIRSFLPSHQLRCTNFEVLTAFVWRCRTVALQPSSDEEVRILCIVNARAKLDSPLPTGYYGNAFAISPAITTAGKLCENPLGYAVDLVRKAKANITREYMHSLADLMAIKGRPHFSMEKSFLVSDLKLAGFRRVDFGWGNAIYGGLAKGGIGPIPSLASFNVPFKNDKGEEGLLTPMCLPSKAMERFIKELDNVLKKHIQPARGGLNSGFIVSAL* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2342 466 Gene3D - 11 221 IPR023213 -
Lja3g2342 466 PANTHER ALCOHOL ACYLTRANSFERASE 14 448 - -
Lja3g2342 466 Gene3D - 222 441 IPR023213 -
Lja3g2342 466 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 14 448 - -
Lja3g2342 466 Pfam Transferase family 16 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2342 Lja-Chr3 28383925 28385588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2342 16 442 Monolignol Biosynthesis Gene Families AT5G48930 29.213 3.30e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2342 K19861 - gmx:100797017 693.345