Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2339 ATGGCTGAACACGAAGAAGAGGTTCACAATTCTCATCCACACGCCGATTCCTCTCCTCCTCCACCTGCCACCGACGCCAATTCTCATGCTACACGGCATGCTAGGCGGGTGAATGTTGAGGACCTTCCTCCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTTAGTCAAGTTATGGCCAATATTGGGGGAAACACTGCTGGCCCAGGTGATGCTGTAGTCAATGTTTGCATTAACCATGACATGAATTTCGCTTTCGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCTATGGCTTTAGATGGGATTATTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGCCAACCTAACCCAAACCTTAATCTGGGTGCTGTTGGTTTAACACCTGGATCTGCCGGTGGACTTGGAGGACCTGATCGAATTTTTGTGGGAGGACTTCCTTACTACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGTCTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACGGACATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCTCAGCAGCCTAACCCAAACCTTAATCTGGCCGCTATTGACTTAACACTTGGATCTGCCGGTGGACTTGATGGTCCTGATCGTATTTTTGTGGGAGGACTTCCTTATTACTCCACTGAAACGCAAATCAGAGAGCTTTTAGAGAACTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACTGGGAATTCAGAAGCTTATGCAGTTTGCGTTTACCAAGACCTTGCAGTTACGGATATTGTCTGTGAAGTTCTCAATGGAATAAATATGGGAGATAGGACACTTACAGTTAGACGTGCTAATCAAGATGCGAACCCACAGCAGCTTAACTCAAGCCTTAATCTGGGTGCTGTAGCTTAA 1077 0.454 MAEHEEEVHNSHPHADSSPPPPATDANSHATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLGGPDRIFVGGLPYYFTETQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPNPNLNLAAIDLTLGSAGGLDGPDRIFVGGLPYYSTETQIRELLENFGPLRGFDLVKDRETGNSEAYAVCVYQDLAVTDIVCEVLNGINMGDRTLTVRRANQDANPQQLNSSLNLGAVA* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2339 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 118 IPR000504 GO:0003723
Lja3g2339 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 233 IPR000504 GO:0003723
Lja3g2339 358 CDD RRM2_U2AF65 155 231 - -
Lja3g2339 358 SMART rrm1_1 156 229 IPR000504 GO:0003723
Lja3g2339 358 SMART rrm1_1 264 337 IPR000504 GO:0003723
Lja3g2339 358 SMART rrm1_1 36 114 IPR000504 GO:0003723
Lja3g2339 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 226 IPR000504 GO:0003723
Lja3g2339 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 334 IPR000504 GO:0003723
Lja3g2339 358 SUPERFAMILY RNA-binding domain, RBD 262 348 IPR035979 GO:0003676
Lja3g2339 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 341 IPR000504 GO:0003723
Lja3g2339 358 PANTHER RNA-BINDING PROTEIN 237 347 - -
Lja3g2339 358 PANTHER RNA-BINDING PROTEIN 22 236 - -
Lja3g2339 358 CDD RRM1_U2AF65 34 116 - -
Lja3g2339 358 MobiDBLite consensus disorder prediction 1 32 - -
Lja3g2339 358 Gene3D - 148 243 IPR012677 -
Lja3g2339 358 Gene3D - 255 352 IPR012677 -
Lja3g2339 358 Gene3D - 30 131 IPR012677 -
Lja3g2339 358 CDD RRM2_U2AF65 263 339 - -
Lja3g2339 358 PANTHER SPLICING FACTOR U2AF LARGE SUBUNIT A 237 347 - -
Lja3g2339 358 PANTHER SPLICING FACTOR U2AF LARGE SUBUNIT A 22 236 - -
Lja3g2339 358 SUPERFAMILY RNA-binding domain, RBD 154 240 IPR035979 GO:0003676
Lja3g2339 358 SUPERFAMILY RNA-binding domain, RBD 15 121 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2339 Lja-Chr3 28344476 28346859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2339 151 347 Eukaryotic Initiation Factors Gene Family AT1G22760 24.876 3.07e-12 65.9