Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2333 ATGGGGAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACAACTAATCGCCAGGTGACATTCTGCAAGAGAAGAAACGGGCTTCTGAAGAAAGCTTATGAGCTATCAGTGCTGTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGCCTCTATGAATATTCAAACAACAACATCAGGTCAACTATAGAGAGGTACAAAAAGGCTTGTTCAGATCATTCAAGTACGAGCACTACCACAGAAATTAATGCTCAGTACTATCAACAAGAATCTGCCAAGCTGCGACAACAAATTCAGATGCTGCAAAATTCAAACAGGCACTTAATGGGTGATGCCTTAAGCACCCTGACGGTGAAGGAGCTTAAGCAACTTGAGAACAGGCTTGAAAGGGGAATCACTAGAATTAGATCCAAGAAACATGAGATGCTACTAGCTGAAATTGAATACTTCCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTTCGGACTAAGATAACTGATGTTGAGAGGATTCAGCAAGTAAACATGGTTTCTGGACAAGAGCTGAATGCCATTCAGGCATTAGCTTCTCGTAACTTTTTCAATCCACCCATGATTGAAGATGGAACTTCCTACCCTCAGCAGCCTGATAAGAAGATCCTTCATCTTGGGTGA 672 0.4286 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSSTSTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKITDVERIQQVNMVSGQELNAIQALASRNFFNPPMIEDGTSYPQQPDKKILHLG* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2333 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja3g2333 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja3g2333 223 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja3g2333 223 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Lja3g2333 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja3g2333 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja3g2333 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja3g2333 223 Coils Coil 87 107 - -
Lja3g2333 223 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g2333 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 213 - -
Lja3g2333 223 Coils Coil 124 144 - -
Lja3g2333 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja3g2333 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja3g2333 223 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lja3g2333 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g2333 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2333 Lja-Chr3 28258722 28264425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2333 1 223 MADS-box Gene Family AT4G09960 75.217 1.71e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja3g2333 K-box 7.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2333 K09264 - gmx:100301905 414.461