Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2301 ATGCACCACAACCTCGCCAGGTTGTGGATTGCTTTGCTCGCGGTCGCAACCGCCGCAGTTCATTGCAAAACCTCCTCCCAAGATGTTGCAGCCCTAAATGTGATGTTTTCGAGCTTAAATTCGCCTAAGCAACTCAGTGGCTGGAAATCAAGTGGAGGTGATCCTTGTGGTGACTCATGGGAAGGAATCAAATGCTCTGGCTCATCTGTCACTGAAATAAATTTATCTGACATGGATCTTTCTGGATCAATGGGTTACCAGTTGGCGAGCTTAACATCGGTTACCTACTTTGATTTGAGCAACAACAACCTAAAGGGTGATATACCGTATCAACTTCCTCCAAAAGCTCGTTTCATAGATCTTTCTAACAATGGCTTCACCGGAAGTATGCCCTATTCCTTTTCTCAAATGAGTGACCTCAACCACCTAAATCTTGCTCATAATCGGCTCAATAACCAGTTGGGAGATATGTTTGCGAAGCTCACTAAACTCAAAGAACTGGATGTATCATTCAATTCAATGTCAGGAAACCTGCCTCAGAGTCTTAAATCACTCAAAAGCATCAAGAAGTTGCATCTGCAAAACAATCAATTCTCCGGTTCAATAAATGTCCTTGCCAGCCTCCCGCTTGAAGACTTGAATGTTGAAAATAACAAATTTACTGGTTGGATCCCTGAAGAGTTAAAGGAAATAGACAGCTTGCAAACTGGAGGAAATTCTTGGTCAACTGGACAAGCACCACCTCCTCCTCCTGGTACACCTCCTATCAAGCATCATGAGAAAAAGGGTGGATCGTCTGTTATTAGTGGAGTAGTTATAGCAGGCATAGCTTTTGGTGTGCTGGCAGTAATTATAGTTGTTGTTGCTCTTTCTAAAAGAAGAAGGTCATCTTTACCTTCTTCACATTTTATCGATGAAGAGAGGCACAGCCAGCACAGATCCTTTACACCCCTTGCATCGCAGGAGTTATGCAAAGATTCGGGTGATGATGTAAGCAAAGAATACAAAGGATTTAAGTCATTGGATTCCACATTCGATTCGACTACAATTGACATAAAGACTTTGCAAAAAACACCATCAATTGGTGTTAGGTCATCAGTCTCTGATTGTGTGCAATCCTATAATGATAATGAGTTTGCCAATCGTCTAAATTCTAAAAGAAGCACATCTGTCCGTTGTATTCCGTTTTCATTGTCAGAGTTGCAGACTGGTACTGCTAATTTTGCCTCTGGTCGACTTCTAGGTGAAGGATCCATTGGGTGTGTTTATCGAGCAAAATATGCAGATGGAAAGGTATTGGCTGTAAAAAAATTCAACTCTTCACTTGTTAATGGTAGTCGTCCAGAGGAGTTCTCTCAGATTGTTTCAAGCATCTGCAAACTTCACCATCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAACAGGAGCACATCTTAATATATGATTACTACAGAAACGGCTCTCTCCATGACTTTTTACACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAACCGCTCGGGCTGTTGAGTACCTACATGAAATTTGTTCTCCAACTATAATTCACAAGAATATCAAGTCCTCCAATATTTTGCTTGACACGGATCTGAATCCCCGTCTCTCAGACTATGGTTTGGCTTCCTTCCACCAGCGAACTAGCCAAAATCTTGGGGCAGGATATAACGCACCTGAGTGCGCAAAACCTTTAGCCTACACCCTGAAGAGTGATGTATACAGTTTCGGGGTAGTCATGCTGGAACTTTTGACAGGACGAAAGCCTTTCGACAGTTCGAAGCCAAAACAAGATCAGTGTCTTGTTCGTTGGGCTACCCCGCAGCTTCATGACATTAATGCGGTGGAGAAAATGGTGGACCCTGCCTTGCGGGGACTTTACCCTCCTAAATCACTTTTCCGATTTGCTGACATTATCGCCCTTTGTGTTCAGGCTGAGCCAGAATTTCGGCCACCTGTGTCAGAGGTGGTTCAGTCATTGGTGCGATTAGTTCAACGTTCAAGCATGAAAATGAGAGAGGATCTTGGAGGCTTCGGTCGGTTGGATGATTACGATGACTGA 2106 0.4311 MHHNLARLWIALLAVATAAVHCKTSSQDVAALNVMFSSLNSPKQLSGWKSSGGDPCGDSWEGIKCSGSSVTEINLSDMDLSGSMGYQLASLTSVTYFDLSNNNLKGDIPYQLPPKARFIDLSNNGFTGSMPYSFSQMSDLNHLNLAHNRLNNQLGDMFAKLTKLKELDVSFNSMSGNLPQSLKSLKSIKKLHLQNNQFSGSINVLASLPLEDLNVENNKFTGWIPEELKEIDSLQTGGNSWSTGQAPPPPPGTPPIKHHEKKGGSSVISGVVIAGIAFGVLAVIIVVVALSKRRRSSLPSSHFIDEERHSQHRSFTPLASQELCKDSGDDVSKEYKGFKSLDSTFDSTTIDIKTLQKTPSIGVRSSVSDCVQSYNDNEFANRLNSKRSTSVRCIPFSLSELQTGTANFASGRLLGEGSIGCVYRAKYADGKVLAVKKFNSSLVNGSRPEEFSQIVSSICKLHHPNIAELVGYCSEQEHILIYDYYRNGSLHDFLHLSDDFSKPLTWNTRVRIALGTARAVEYLHEICSPTIIHKNIKSSNILLDTDLNPRLSDYGLASFHQRTSQNLGAGYNAPECAKPLAYTLKSDVYSFGVVMLELLTGRKPFDSSKPKQDQCLVRWATPQLHDINAVEKMVDPALRGLYPPKSLFRFADIIALCVQAEPEFRPPVSEVVQSLVRLVQRSSMKMREDLGGFGRLDDYDD* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2301 701 Pfam Protein tyrosine and serine/threonine kinase 411 675 IPR001245 GO:0004672|GO:0006468
Lja3g2301 701 MobiDBLite consensus disorder prediction 234 262 - -
Lja3g2301 701 Gene3D Ribonuclease Inhibitor 22 250 IPR032675 -
Lja3g2301 701 ProSiteProfiles Protein kinase domain profile. 408 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2301 701 Gene3D Transferase(Phosphotransferase) domain 1 485 692 - -
Lja3g2301 701 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 17 695 - -
Lja3g2301 701 Pfam Leucine rich repeat 119 173 IPR001611 GO:0005515
Lja3g2301 701 SUPERFAMILY L domain-like 23 235 - -
Lja3g2301 701 SUPERFAMILY Protein kinase-like (PK-like) 387 675 IPR011009 -
Lja3g2301 701 PANTHER OS01G0253100 PROTEIN 17 695 IPR045271 GO:0004714|GO:0006468
Lja3g2301 701 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Lja3g2301 701 Gene3D Phosphorylase Kinase; domain 1 367 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2301 Lja-Chr3 27565132 27578680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2301 1 700 Strubbelig Receptor Gene Family AT1G78980 61.150 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lja3g2301 PK_Tyr_Ser-Thr 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2301 - - ccaj:109807669 1067.37