Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2290 ATGGATTCAAAGAAGTCCAACAAGATCAGAGAGATTGTTAGGCTTCAACAAATCCTCAAGAAGTGGAAGAAAGTTGCAAATACTTCCAAGAATGACTCTGTCTCTGCGGTCACCACCACCGCCGCCACTACCACTGTCACCGCCACCAGTGGAAGTAGCAACAAAGGCATCAAGTTTTTAAAACGAACTTTGTCATTCACAGATGTTTCTTCTTCCAATAATGACATCGTTCCAAAAGGGTTTCTTGCTGTTTGTGTGGGGAAAGAACTCAAGAAATTCATCATTCCCACACATTACTTGAGACACCAAGCATTTGAGATGTTACTGCAAGAGGCCGAAGAGGAATTTGGTTTCCAGCAAGAGGGTGTGCTCAAAATTCCGTGTGAAGTTTCAGTGTTTGAGAAGATATTGAAGGTGGTGGAAGATAAAAAAGAAGCATTCCTCAGCTTGCATGAGTTTGGGTTGAGTGGAGAGAACAACAAGATTAATAGTTGTGAAGTTACTCCCACTCATCATGCTCAAGTGTGTAGATGA 534 0.4213 MDSKKSNKIREIVRLQQILKKWKKVANTSKNDSVSAVTTTAATTTVTATSGSSNKGIKFLKRTLSFTDVSSSNNDIVPKGFLAVCVGKELKKFIIPTHYLRHQAFEMLLQEAEEEFGFQQEGVLKIPCEVSVFEKILKVVEDKKEAFLSLHEFGLSGENNKINSCEVTPTHHAQVCR* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2290 177 PANTHER OSJNBA0060N03.10 PROTEIN 5 157 - -
Lja3g2290 177 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 157 IPR003676 GO:0009733
Lja3g2290 177 Pfam Auxin responsive protein 21 139 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2290 Lja-Chr3 27449860 27450393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2290 1 177 Calmodulin-binding Proteins AT2G24400 50.262 1.03e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2290 K14488 - fve:101309563 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2290 3 27449860 27450393 Lja3g2290 3 27449860 27450393 ECH