Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2287 ATGTCTGGGGGAGATGCGCAGAAGGGAAAAAGAATCGCCATAATTGGTGTCTCAGCCTTGTTATTGGTGGCTATGATTGTGGCTGTCACAATTGGCGTGAATAAGAGTGAAGCAAACAATGATATAGAAGACACCATGAAGAACCATGTTGCTACCACGGTAAAAGCAGTCCAAACCCTTTGCCATCCCACTGATTACAAGAAAGAATGTGAGGAAACCTTGATAGCAGAGGCTGGAAACACCACTGACCCAAAAGAACTTACTAAAATTGCCTTCAACATTACAATTAACAAAATTGGTGACAAGCTCAAGGAAACTGAGTTGTTGCATGAGGTTGAGAAGGATCCAAGAGCCAAGATGGCACTTGACACATGTAAACAACTCATGGATCTTTCAATTGGGGAGTTAACAAGGTCAGTTGATGGAATAGACGAGTTTCATCTCAACAATCTGGACAAAATTCTCATGAATGTAAAGGTTTGGCTTAGCGGCGCAGTCACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACAAGCGAAGCCGGGACGAATATGAAGGAGCTATTAACAACAAGCATGCATATGAGTAGCAATGCCCTGGCTATTGTCTCTGAACTTGCTGACACCATATCAGATTGGAATTGGGGAAAAACCAATATTGTCCCTCCGTGTGAGGCATTGAAGAAGGTTCCTGAGCATAACAAAAAGCCATTTGTGATTTACATCAAGGAAGGCATTTATCAAGAGTATGTTGATGTTACCAAGCATATGATCCACGTTGTGTTTTTGGGTGATGGTGGCAAAAAGACACGAATCACTGGAAACAAAAACTTCATTGATGGGATTAACACCTACAGAACTGCAACCGTTGCTGTCCAAGGAGATCATTTTACTGCCATCAATATGGGTTTTGAGAACTCTGCTGGCCCCCAAAAGCATCAAGCAGTGGCATTAAGAGTTCAAGCTGACAAAACCATCTTCTTCAATTGCTCAATGGATGGGTACCAAGATACACTTTATGCCCACACCATGCGTCAATTCTATCGGGATTGCACCATTTCGGGTACCATCGACTTTGTCTTTGGTAATGCGCTAGCCGTTTTTCAGAATTGCACTTTCGTGGTCCGAAAGCCATTGGAAAACCAACAATGCATTGTAACTGCACAAGGCAGGAAAGAAAGGCAACAACCATCAGGAATACTCATTCAAGGGGGTTCCATTGTGTCTGACCCTGAGTTCTACCCTGTGAGATTTGACAACAAGGCTTACCTAGCTCGTCCATGGAAGAATTACTCTAGAACTATCATCATGGACAGCTACATTGATGATTTGATTCATCCTGATGGCTATCTTCCATGGCAAGGATTAGAAGGCCCATCAGGCATGGACACTTGCTTCTATTCTGAGTACCACAATGTAGGTCCGGGTTCAGATAAATCAAAGCGTGTAAACTGGGCTGGAATTTGGAACCTCAATTCAAAAGCTGCACATTCGTTCTCTCCGTCCAAATTGTTCCATGGAGATGACTGGATTGAGGCTACTGGGATCCATTACTTCCCTGACATTCCCAAGCATTACAGGCACAAGAAAACATTACTTAATTGGTGA 1614 0.4312 MSGGDAQKGKRIAIIGVSALLLVAMIVAVTIGVNKSEANNDIEDTMKNHVATTVKAVQTLCHPTDYKKECEETLIAEAGNTTDPKELTKIAFNITINKIGDKLKETELLHEVEKDPRAKMALDTCKQLMDLSIGELTRSVDGIDEFHLNNLDKILMNVKVWLSGAVTYQDTCLDGFENTTSEAGTNMKELLTTSMHMSSNALAIVSELADTISDWNWGKTNIVPPCEALKKVPEHNKKPFVIYIKEGIYQEYVDVTKHMIHVVFLGDGGKKTRITGNKNFIDGINTYRTATVAVQGDHFTAINMGFENSAGPQKHQAVALRVQADKTIFFNCSMDGYQDTLYAHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPLENQQCIVTAQGRKERQQPSGILIQGGSIVSDPEFYPVRFDNKAYLARPWKNYSRTIIMDSYIDDLIHPDGYLPWQGLEGPSGMDTCFYSEYHNVGPGSDKSKRVNWAGIWNLNSKAAHSFSPSKLFHGDDWIEATGIHYFPDIPKHYRHKKTLLNW* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2287 537 CDD PMEI-like_3 59 209 - -
Lja3g2287 537 PANTHER PECTINESTERASE 227 521 - -
Lja3g2287 537 TIGRFAM PME_inhib: pectinesterase inhibitor domain 50 208 IPR006501 GO:0004857
Lja3g2287 537 Gene3D - 226 525 IPR012334 -
Lja3g2287 537 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Lja3g2287 537 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Lja3g2287 537 Pfam Pectinesterase 226 510 IPR000070 GO:0030599|GO:0042545
Lja3g2287 537 PANTHER PECTINESTERASE 10 217 - -
Lja3g2287 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 209 IPR035513 -
Lja3g2287 537 PANTHER PECTINESTERASE 227 521 - -
Lja3g2287 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Lja3g2287 537 SMART PMEI_2 52 204 IPR006501 GO:0004857
Lja3g2287 537 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Lja3g2287 537 PANTHER PECTINESTERASE 10 217 - -
Lja3g2287 537 SUPERFAMILY Pectin lyase-like 227 522 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2287 Lja-Chr3 27402914 27404888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2287 5 520 Carbohydrate Esterase AT3G05610 46.512 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2287 K01051 - gmx:100803527 914.45