Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2286 ATGTTTGGGGGAGATGCAGAGAAGGGAAAAAGAATCGCCATAATTGGTGTATCAACCTTGTTATTGGTTGCTATGGTTGTGGCTGTCACAGTTAGCGTGAACAAGAGTGAAGCAAACAATGATATAGAAGACAACATGAAGAACCATGTTGCTACCACGGTAAAAGCAGTCCAAACCCTTTGCCATCCCACTGATTACAAGGAAGAATGTGAGGAAACCTTGATAGCAGAGGCTGGAAACACCACTGACCCAAAAGAACTTGTAAAAATTGCCTTCAACATTACAATCAAGAAAATTGGTGACAAACTCAAGGAAACTGAGTTGTTGCATGAGGTTGAGAAGGATCCAAGAGCCAAGATGGCACTAGACACATGCAAACAACTTATGGATCTTTCAATTGGGGAGTTAACAAGGTCAGTTGATGGAATAGACGAGTTTCATCTCAACAATTTGGACAAAATTCTCATGAATGTAAAGGTTTGGCTTAGTGGTGCTGTCACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACTAGCGAAGTTGGGATGAAGATGAAGGAGCTATTAACAACAAGCATGCATATGAGTAGTAATGCCTTGGCTATTGTCTCGGAACTTGCTGACACCATATCAGATTGGAATGTCACAAAGTTAACCGGGCGACGCCTCCTCCTTCAGGATTCTAGGACTCCCTCATGGGTTGATCTTGGTCATCGTAGACTCATTGATTCCAAGAAAAATACTTTCAAACACAAGCCTAATGTGACTGTAGCCATAGATGGCAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGAAGGTTCCTGAGCATAACAAAAATCCATTTGTGATTTACATCAAGGAGGGAATTTACCAAGAGTATGTTGAAGTTACCAAGCATATGACCCATGTTGTGTTTTTGGGTGATGGTGGAAAAATTACACGAATCACTGGAAACAAAAACTTCATTGATGGGATTAACACCTACAGAACTTCAACCGTTGCTATACAAGGAGATCATTTTGCTGCCATCAATATGGGTTTTGAAAACTCTGCTGGCCCCCAAAAGCATCAAGCAGTGGCATTAAGAGTTCAAGCTGACAAGACCATCTTCTTCAATTGCTCAATGGATGGGTACCAAGATACACTTTATGCCCACACCATGCGTCAATTCTATCGGGATTGCACCATTTCGGGTACCATCGACTTTGTCTTTGGTAATGCGCTAGCCGTTTTTCAGAATTGTACTTTCGTGGTCCGAAAGCCATTGGAAAACCAACAATGCATTGTAACTGCACAAGGCAGGAAAGAAAGGCAACAACCATCAGGAATAGTCATTCAAGGGGGTTCCATTGTGTCTGACCCTGAGTTCTACCCTGTGAGATTTGACAATAAGGCTTACCTAGCTCGTCCATGGAAGAATTACTCTAGAACTATCATCATGGACAGCTATATTGATGATTTGATTCATCCTGATGGCTATCTACCATGGCAAGGATTAGAAGGTCCATCCGGCATGGACACTTGCTTCTATTCTGAGTACCACAATGTAGGTCCGGGTTCAGATAAATCAAAGCGTGTAGATTGGGCTGGAATTTGGAATCTCAATTCAAAAGCTGCACATTTGTTCTCCCCATCCAAATTTTTCCATGGAGATGACTGGATTGAGGCTACCGGGATCCCTTACTTCCCTGAGATTCCCAAGCATTACAGGCACAAGAAAACATTACTTAATTGGTGA 1749 0.4225 MFGGDAEKGKRIAIIGVSTLLLVAMVVAVTVSVNKSEANNDIEDNMKNHVATTVKAVQTLCHPTDYKEECEETLIAEAGNTTDPKELVKIAFNITIKKIGDKLKETELLHEVEKDPRAKMALDTCKQLMDLSIGELTRSVDGIDEFHLNNLDKILMNVKVWLSGAVTYQDTCLDGFENTTSEVGMKMKELLTTSMHMSSNALAIVSELADTISDWNVTKLTGRRLLLQDSRTPSWVDLGHRRLIDSKKNTFKHKPNVTVAIDGSGDFKSINEALKKVPEHNKNPFVIYIKEGIYQEYVEVTKHMTHVVFLGDGGKITRITGNKNFIDGINTYRTSTVAIQGDHFAAINMGFENSAGPQKHQAVALRVQADKTIFFNCSMDGYQDTLYAHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPLENQQCIVTAQGRKERQQPSGIVIQGGSIVSDPEFYPVRFDNKAYLARPWKNYSRTIIMDSYIDDLIHPDGYLPWQGLEGPSGMDTCFYSEYHNVGPGSDKSKRVDWAGIWNLNSKAAHLFSPSKFFHGDDWIEATGIPYFPEIPKHYRHKKTLLNW* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2286 582 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Lja3g2286 582 CDD PMEI-like_3 59 209 - -
Lja3g2286 582 PANTHER PECTINESTERASE 10 567 - -
Lja3g2286 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 40 208 IPR006501 GO:0004857
Lja3g2286 582 SMART PMEI_2 52 204 IPR006501 GO:0004857
Lja3g2286 582 Gene3D - 250 569 IPR012334 -
Lja3g2286 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Lja3g2286 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 209 IPR035513 -
Lja3g2286 582 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Lja3g2286 582 SUPERFAMILY Pectin lyase-like 254 566 IPR011050 -
Lja3g2286 582 PANTHER PECTINESTERASE 10 567 - -
Lja3g2286 582 Pfam Pectinesterase 256 555 IPR000070 GO:0030599|GO:0042545
Lja3g2286 582 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2286 Lja-Chr3 27390457 27392692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2286 5 565 Carbohydrate Esterase AT3G05610 49.911 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2286 K01051 - gmx:100820556 991.49