Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2266 ATGGCAATCGAGAACAAGGAGCAAAAACCAACCAAGGAGGAGTTCATTTTCAAGTCCAAGCTTCCTGATATCTACATTCCCAAACACCTTCCCCTACATTCATACTGCTTTGAAAATCTCTCAGAGTTCGGTTCACGCCCTTGTTTGATAAACGCTCCAACCGGTGACATTTTCACTTACCACGACGTGGACCTCAAGGCACGACGAGTAGCTTCTGGTCTCAACAAATTGGGTGTCCAACAAGGTGATGTTATCATGATCCTCCTCCCTAACACTCCAGAATATGTGTTTTCTTTCCTCGGCGCTTCCTTTCTCGGCGCCATGACAACCGCCGCAAACCCCTTCTTCACCGCCGCTGAAATCGCCAAACAAGCAAAAGCTTCAAATTCCAAGTTGATCATAACACAAGCGTCTTACTATGAAAAGGTGAAGGACTTGGATTTGAAGCTGGTTTTCATTGATTCTCCTCCAAATGGGTACTTGCATTTCAGTGAAATTGCTGATTCTGATGAAAATGAAATGCCAGAGGTGAAGATCAACCCTGATGATGTTGTAGCATTGCCTTATTCTTCAGGAACAACAGGGCTTCCAAAAGGGGTTATGCTAACACACAAGGGGTTAGTTACCAGCATTGCTCAACAAGTTGATGGAGAGAATCCAAACCTCTATTACCATTGTGAAGATGTGATACTCTGTGTTCTTCCCCTGTTTCACATTTACTCTCTGAACTCTGTTTTGCTCTGTGGCTTAAGAGCCAAAGCTGCGATTTTGTTGATGCCCAAGTTCGATATTCATGCTTTGCTGCCTCTGGTGAACAAATATAGAATCACCATTATGCCGGTTGTGCCGCCGATTGTTCTGGCCATTGCTAAGTCCCCTGATCTTGAGAAACATGATCTTTCTTCCATCAGGGTGTTGAAATCTGGTGGAGCACCACTTGGGAAGGAGCTTGAAGACAGTGTCAGGGCCAAATTCCCCAAAGCCAAACTTGGACAGGGTTATGGGATGACAGAGGCAGGTCCAGTGTTGACAATGTGTTTATCATTTGCTAAAGAGCCGCTAGATGTGAAATCAGGTGCATGTGGAACTGTTGTGAGGAATGCAGAGATGAAGATTGTGGATCCCGAAACTGATACTTCTTTACCTAGGAATCAACCTGGTGAAATTTGTATTAGAGGTGACCAAATCATGAAAGGTTATCTAAATGACCCTGAGGCTACTGAGAGGACTATAGACAAAGAAGGTTGGTTGCATACAGGTGATATTGGATACATCGACGAAGATGATGAGTTGTTCATCGTTGATAGGTTGAAGGAATTGATCAAATATAAAGGTTTTCAAGTGGCTCCAGCTGAACTCGAAGCCCTTATTCTCTCACACCCTAAGATCTCAGATGTTGCTGTGGTCCCAATGAAGGATGAAGCAGCGGGTGAGGTCCCAGTTGCATTTGTGGTGAGATCAAATGGTTGTACAGACACTACTGAGGATGAAATTAAGCAGTTCGTTTCCAAACAGGTGGTGTTTTACAAAAGAATAAACCGGGTGTTCTTCATTGATGCCATTCCCAAGTCACCCTCAGGCAAAATATTACGAAAGGACCTAAGGGCCAAGCTTGCAGCGGGTGTTACCAATTGA 1635 0.4428 MAIENKEQKPTKEEFIFKSKLPDIYIPKHLPLHSYCFENLSEFGSRPCLINAPTGDIFTYHDVDLKARRVASGLNKLGVQQGDVIMILLPNTPEYVFSFLGASFLGAMTTAANPFFTAAEIAKQAKASNSKLIITQASYYEKVKDLDLKLVFIDSPPNGYLHFSEIADSDENEMPEVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHCEDVILCVLPLFHIYSLNSVLLCGLRAKAAILLMPKFDIHALLPLVNKYRITIMPVVPPIVLAIAKSPDLEKHDLSSIRVLKSGGAPLGKELEDSVRAKFPKAKLGQGYGMTEAGPVLTMCLSFAKEPLDVKSGACGTVVRNAEMKIVDPETDTSLPRNQPGEICIRGDQIMKGYLNDPEATERTIDKEGWLHTGDIGYIDEDDELFIVDRLKELIKYKGFQVAPAELEALILSHPKISDVAVVPMKDEAAGEVPVAFVVRSNGCTDTTEDEIKQFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGVTN* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2266 544 Gene3D - 10 437 IPR042099 -
Lja3g2266 544 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 10 539 - -
Lja3g2266 544 Gene3D - 438 541 IPR045851 -
Lja3g2266 544 CDD 4CL 26 534 - -
Lja3g2266 544 Pfam AMP-binding enzyme 40 443 IPR000873 -
Lja3g2266 544 Pfam AMP-binding enzyme C-terminal domain 452 528 IPR025110 -
Lja3g2266 544 SUPERFAMILY Acetyl-CoA synthetase-like 20 540 - -
Lja3g2266 544 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Lja3g2266 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2266 Lja-Chr3 27153259 27157749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2266 6 506 Monolignol Biosynthesis Gene Families AT1G51680 69.786 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2266 K01904 - gmx:547944 884.789