Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2248 ATGGCTTCTCCTCCGCCTTCCGCCTCCGATTCCAACGGCCACTTCGCCGTCAACATCCCTCGGCACCACCCTGACCACACCGACGACGACGCTCCTCACCGTCAAGATGACGACGACGAACTCATCGATCCAGATGATCCTTTTGATATCACTCAAACCAAGAATGCATCGCACGACACGCTCAGGCGTTGGAGACAAGCAGCGCTCGTGCTCAATGCGTCCAGGCGTTTTAGATATACTCTGGACTTGAAGAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCTTGATTAGAGCCCATGCACAAGTCATAAGAGCTGCACTGCTTTTCAGATTGGCTGGTGAACGGGAGCTAGTGATAAGCACAGCAGCGACACCTGCAACGCCAGTTGGTGACTATACAGTTGGATTAGAACAGCTTGCTTCAATGTCTAAGGATCAAAATGTTGCTGCTTTACAACAATATGGAGGGATTAAAGGCTTATCAAATTTACTAAAATCAAATCCAGATAAAGGTATTAGTGGAGATGATGGTGATCTATTGAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAGAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAGGCTTGGCAAGACTTGACTCTCATAATATTGATTATAGCAGCTGCAGTGTCATTGGCACTTGGAATAAAAACAGAGGGTTTGGAAGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTTTGCTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTCAGAATTTGAATGCAGAGAAACAGAATATACAATTGGAGGTCATTAGAGGTGGGAGAACAATTAAAATTTCGATATTTGAGATTGTTGTGGGTGATGTTATCCCCCTCAAAATAGGAGATCAGGTTCCTGCTGATGGAGTACTAATAACCAGCCATTCACTAGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCATAAGGATCACAAAACACCCTTTTTGATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGTTATGCTGGTAACCGGTGTTGGTATAAACACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTACGTTTGAATGGAGTGGCGACTTTTATTGGTATAGTTGGGCTTTCTGTAGCAGTTTTAGTGCTTGCAGTCCTCCTGGGCAGATACTTTTCCGGCCATACAAAAGATTTAGATGAAAAACCTCAATTTGTAGCTGGAAAGACTAGTATTAGCGATGCAGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTCACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTTCCTTTGGCTGTTACCTTAACCCTGGCATATTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTACGAAGGCTGTCAGCCTGCGAAACTATGGGCTCTGCTACAACAATTTGCAGTGATAAGACTGGAACATTGACCTTAAATCAGATGACTGTCGTTGAGGCATATGTTGGGAGGAAGAAACTAGATCCAGCGGATGACTCATCAAAGTTGGATCGAGAAGTATTATCTCTGATAAATGAGGGCATTGCACAGAATACAACTGGAAATATTTTTGTGCCCAAGGATGGTGGAGAGACAGAGGTGTCAGGATCTCCTACAGAGAAGGCCATTCTGTCATGGGCGGTCAAGTTGGGTATGAATTTTGATCTTGTCAGATCTAATTCAACTGTTCTTCATGTCTTCCCTTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTTTGAAGCTGGGGGACTCTGGAGTACATATACACTGGAAAGGAGCTGCAGAGATAGTTCTTGGAACATGTACCCAATATCTTGATTCAAATGGTGACTTGCAATCCATTGAACAAGAGAAGGCATTTTTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGCTTACGTTGTGTTGCCATTGCATACAGATCATATGAGTTAGATGAAGTTCCATCTAACGAGGAGGACTTAGACCAATGGACCTTGCCAGAGCATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGCGTCAAAGATGCTGTAAAATTATGCACTGATGCTGGTGTTAAGGTACGCATGGTTACTGGTGACAACCTTCAAACAGCAAAGGCAATAGCTTTGGAGTGTGGGATACTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAGTTATCTGAAAAAGAAAGGGAACAAATTGTTAAGAAAATAACGGTGATGGGGAGGTCTTCTCCTAATGATAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTTGTTGCTGTAACTGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATCATAATCCTGGATGATAATTTTGCTTCAGTGGTAAAGGTTGTCCGCTGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTTAATGTTGCTGCTCTTGTAATTAATGTTGTGGCATCAATAACTTCTGGTGATGTTCCCTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCATTGGCTACTGAACCACCAACAGACAATCTAATGAACAGATCACCAGTTGGCCGAAGGGAACCTCTTATTACGAATGTCATGTGGAGAAACTTGCTCGTTCAGGCTATCTATCAAATCACTGTTCTTCTCGTTCTTAACTTCCGCGGTGAAAGTATTCTACCAAAGCAAGATACTAGAGCTCACGCTTTTCAAGTGAAGAATACTTTAATATTCAACGCATTTGTCATGTGCCAAATATTCAACGAGTTCAATGCTCGGAAACCTGAGGAAATGAATGTCTTCCGAGGAGTGACCAAGAACCGTCTCTTCATGGGAATTGTTGTAATGACCTTTATACTACAGATAATCATCATTGAGTTCCTTGGAAAGTTCACCGATACAGTGAGGCTTAATTGGACGCTGTGGCTTGCTTCTCTCCTTATTGGCCTTATCAGCTGGCCTCTTGCTATAGCTGGAAAATTCATTCCAGTTCCTAAAACACCATTGTCCCGTTACATCTTGAGGCCACTTAGGAGATTGAGGAGGTCTCGTGCTGCACAACAATAG 3276 0.4316 MASPPPSASDSNGHFAVNIPRHHPDHTDDDAPHRQDDDDELIDPDDPFDITQTKNASHDTLRRWRQAALVLNASRRFRYTLDLKKEEEKEQKKSLIRAHAQVIRAALLFRLAGERELVISTAATPATPVGDYTVGLEQLASMSKDQNVAALQQYGGIKGLSNLLKSNPDKGISGDDGDLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLALGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTIKISIFEIVVGDVIPLKIGDQVPADGVLITSHSLAIDESSMTGESKIVHKDHKTPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVLVLAVLLGRYFSGHTKDLDEKPQFVAGKTSISDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLDPADDSSKLDREVLSLINEGIAQNTTGNIFVPKDGGETEVSGSPTEKAILSWAVKLGMNFDLVRSNSTVLHVFPFNSEKKRGGVALKLGDSGVHIHWKGAAEIVLGTCTQYLDSNGDLQSIEQEKAFFKEAIDDMAARSLRCVAIAYRSYELDEVPSNEEDLDQWTLPEHELVLLAIVGIKDPCRPGVKDAVKLCTDAGVKVRMVTGDNLQTAKAIALECGILASIEDAVEPNIIEGKTFRELSEKEREQIVKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVASITSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDNLMNRSPVGRREPLITNVMWRNLLVQAIYQITVLLVLNFRGESILPKQDTRAHAFQVKNTLIFNAFVMCQIFNEFNARKPEEMNVFRGVTKNRLFMGIVVMTFILQIIIIEFLGKFTDTVRLNWTLWLASLLIGLISWPLAIAGKFIPVPKTPLSRYILRPLRRLRRSRAAQQ* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2248 1091 MobiDBLite consensus disorder prediction 1 57 - -
Lja3g2248 1091 Gene3D - 494 849 IPR023214 -
Lja3g2248 1091 PRINTS P-type cation-transporting ATPase superfamily signature 321 335 - -
Lja3g2248 1091 PRINTS P-type cation-transporting ATPase superfamily signature 828 840 - -
Lja3g2248 1091 PRINTS P-type cation-transporting ATPase superfamily signature 497 511 - -
Lja3g2248 1091 PRINTS P-type cation-transporting ATPase superfamily signature 697 708 - -
Lja3g2248 1091 PRINTS P-type cation-transporting ATPase superfamily signature 719 729 - -
Lja3g2248 1091 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Lja3g2248 1091 SUPERFAMILY HAD-like 495 909 IPR036412 -
Lja3g2248 1091 Gene3D - 507 704 IPR023299 GO:0000166
Lja3g2248 1091 PRINTS Sodium/potassium-transporting ATPase signature 240 260 - -
Lja3g2248 1091 PRINTS Sodium/potassium-transporting ATPase signature 616 634 - -
Lja3g2248 1091 PRINTS Sodium/potassium-transporting ATPase signature 490 511 - -
Lja3g2248 1091 SFLD p-type atpase 479 856 IPR044492 -
Lja3g2248 1091 Pfam E1-E2 ATPase 274 475 - -
Lja3g2248 1091 SFLD Haloacid Dehalogenase 479 856 - -
Lja3g2248 1091 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 435 522 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g2248 1091 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 771 885 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g2248 1091 Coils Coil 639 659 - -
Lja3g2248 1091 Gene3D - 205 1055 - -
Lja3g2248 1091 SMART Cation_ATPase_N_a_2 153 227 IPR004014 -
Lja3g2248 1091 Pfam Cation transporting ATPase, C-terminus 889 1064 IPR006068 -
Lja3g2248 1091 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 1067 IPR023298 -
Lja3g2248 1091 PANTHER CALCIUM-TRANSPORTING ATPASE 45 1081 - -
Lja3g2248 1091 Gene3D - 180 373 - -
Lja3g2248 1091 Pfam Ca2+-ATPase N terminal autoinhibitory domain 45 88 IPR024750 GO:0005516
Lja3g2248 1091 PANTHER CATION TRANSPORTING ATPASE 45 1081 - -
Lja3g2248 1091 SUPERFAMILY Calcium ATPase, transduction domain A 275 370 IPR008250 -
Lja3g2248 1091 ProSitePatterns E1-E2 ATPases phosphorylation site. 499 505 IPR018303 -
Lja3g2248 1091 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 144 1067 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lja3g2248 1091 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 701 IPR023299 GO:0000166
Lja3g2248 1091 CDD P-type_ATPase_Ca_PMCA-like 179 937 - -
Lja3g2248 1091 Gene3D - 56 110 - -
Lja3g2248 1091 MobiDBLite consensus disorder prediction 19 33 - -
Lja3g2248 1091 Pfam Cation transporter/ATPase, N-terminus 155 222 IPR004014 -
Lja3g2248 1091 Pfam haloacid dehalogenase-like hydrolase 494 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2248 Lja-Chr3 26720518 26739417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2248 7 1089 Primary Pumps ATPases AT3G21180 76.427 0.0 1670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2248 K01537 - gmx:100777845 1816.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2248 3 26720518 26739417 Lja3g2248 3 26720518 26739417 ECH