Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2247 ATGGGTGAAGAGGTGAAGGCATTTGTTCCGGAGTCTGTGTTGAAGAAGAGAAAGAGGGAGGAGGAATGGGCTTTGGCGAAGAAGCAGGAGGTTGAAGCTGCTAAGAAGAAGAGAGCTGAGAGCCGCAAGCTGATCTACAGCAGGGCTAAGCAGTACGCCAAGGAGTACGATGAGCAGGAGAAGGAGTTGATTCGATTGAAGCGTGAGGCTAAGTTGAAAGGTGGATTTTATGTTGATCCTGAGGCTAAGCTCTTGTTTATCATTCGTATCCGTGGTATCAACGCCATGCATCCTAAGACTAGGAAGATCCTGCAGCTATTGAGATTGAGACAGATTTTCAATGGTGTATTCCTTAAGGTTAACAAAGCAACAGTCAACATGTTGCACAGAGTTGAGCCTTATGTTACTTTTGGATACCCTAATCTGAAGAGTGTAAGGGAACTTATCTACAAGAGAGGTTATGGCAAGTTAAACAAGCAGAGAACTGCTCTTACTGACAACTCCATTGTTGAGCAGGCCCTGGGTAAGTTTGGAATCATCTCTGTTGAAGACCTTATCCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCAAACAACTTCCTCTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTGAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAACAGGGAGAACTACATCAATGAGCTAATCAGGCGCATGAATTAA 732 0.4481 MGEEVKAFVPESVLKKRKREEEWALAKKQEVEAAKKKRAESRKLIYSRAKQYAKEYDEQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIVEQALGKFGIISVEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2247 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Lja3g2247 243 Gene3D - 189 243 IPR036919 -
Lja3g2247 243 Gene3D - 84 188 IPR036919 -
Lja3g2247 243 TIGRFAM uL30_euk: 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lja3g2247 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Lja3g2247 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Lja3g2247 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
Lja3g2247 243 PANTHER 60S RIBOSOMAL PROTEIN L7 7 243 - -
Lja3g2247 243 Coils Coil 49 73 - -
Lja3g2247 243 PANTHER 60S RIBOSOMAL PROTEIN L7 7 243 IPR039699 -
Lja3g2247 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2247 Lja-Chr3 26688354 26690232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2247 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 87.083 2.42e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2247 K02937 - gmx:100813342 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2247 3 26688354 26690232 Lja3g2247 3 26688354 26690232 ECH