Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2244 ATGGATAGTATTAATGGGGGTGATTCTCGGACACACATCAGTGATGAACAACATTCTTTGCTTGGTCCATATGTGCAAGAACATGAGCATCATGAATTGCACCATATGAGCAATGGGAATGGGATTGATGATGATCAGAATAACGGTGACAATACTAACTGTGGTGGAGGTGAGAGTGTGGAAGGTGAAGTTCCCTCCAACCATGGAAATATCCATGACAATCACACTGTAATGGTGGATCAAGCGAGTGATGGTGGGGATCAGCTTACATTGTCTTTTCAGGGCCAGGTTTATGTCTTTGACTCGGTTTCACCAGATAAGGTTCAAGCTGTACTGCTGTTACTGGGAGGCCGTGAAATACCTCCAACTGGGCCTGCTATGCCAGTTTCTCCTCACCAGAATAACCGGGGGTTTTCTGGTACTCCACCAAAATTCAGCGTCCCTCAGAGAATAGCATCATTGATTAGATTTCATGAAAAGCGGAAGGAACGAAATTTTGAAAAAAAAATCCGTTATACTGTTCGTAAAGAAGTAGCGTTGAGGATGCAAAGAAATAAAGGTCAGTTTACATCTACCAAGTCCAACCATGATGAATCTACTTCAAATGCAACAAATTGGGGAACAAATGAAAACTGGACGGGAGACAATAATGGATCCCAACAGCAAGATATTGTTTGTAGACACTGTGGCACCAGTGAGAAGTGCACACCAATGATGCGGCGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGGGACTTATCAAGGGCAGCAGCACTCATGCCTGGACCAAATTCTTCATTAAACAAGAATGAGAACAAAAACCCAGAGGCCAGCCAGATAGTGCTTAGAGTCCCAGGAGATGCTGATGAATCATCATCATAG 921 0.443 MDSINGGDSRTHISDEQHSLLGPYVQEHEHHELHHMSNGNGIDDDQNNGDNTNCGGGESVEGEVPSNHGNIHDNHTVMVDQASDGGDQLTLSFQGQVYVFDSVSPDKVQAVLLLLGGREIPPTGPAMPVSPHQNNRGFSGTPPKFSVPQRIASLIRFHEKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSTKSNHDESTSNATNWGTNENWTGDNNGSQQQDIVCRHCGTSEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAALMPGPNSSLNKNENKNPEASQIVLRVPGDADESSS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2244 306 MobiDBLite consensus disorder prediction 188 211 - -
Lja3g2244 306 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Lja3g2244 306 Gene3D - 216 277 IPR013088 GO:0006355|GO:0008270
Lja3g2244 306 Pfam tify domain 87 116 IPR010399 -
Lja3g2244 306 SMART tify_2 82 117 IPR010399 -
Lja3g2244 306 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Lja3g2244 306 CDD ZnF_GATA 225 267 IPR000679 GO:0006355|GO:0043565
Lja3g2244 306 PANTHER GATA TRANSCRIPTION FACTOR 28 24 288 IPR045280 GO:0006355
Lja3g2244 306 MobiDBLite consensus disorder prediction 35 73 - -
Lja3g2244 306 MobiDBLite consensus disorder prediction 274 290 - -
Lja3g2244 306 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Lja3g2244 306 MobiDBLite consensus disorder prediction 40 55 - -
Lja3g2244 306 Pfam CCT motif 150 192 IPR010402 GO:0005515
Lja3g2244 306 ProSiteProfiles GATA-type zinc finger domain profile. 220 268 IPR000679 GO:0006355|GO:0043565
Lja3g2244 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 283 - -
Lja3g2244 306 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Lja3g2244 306 MobiDBLite consensus disorder prediction 274 306 - -
Lja3g2244 306 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Lja3g2244 306 PANTHER GATA TRANSCRIPTION FACTOR 28 24 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2244 Lja-Chr3 26648473 26653908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2244 1 304 Tify Gene Family AT1G51600 59.740 1.88e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja3g2244 CCT 1.1e-14 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2244 3 26648473 26653908 Lja3g2244 3 26648473 26653908 ECH