Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2242 ATGAAGAAGGGTGGCAAGGCTTGCGCGCTTTGCAATCAACAAGCTTCACTCTACTGCCCCTCCGACTCCGCCTTCCTCTGCCGCAACTGCGACGCCACCGTCCACGGTGCCAACTTCCTCGTCGCACGCCACCCCCGCCACCTCCTCTGCTCCACCTGCAACCGTTTCGCCGGAATTCACATCTCCGCCGCCGCACCCTGCTACCGCCAACCAACTTGCTCCTCCTGCTCGCCGTCCGAGACCGATCTCCTCTCTTGCTCCTCCTCCTCCGAGTCTTGCTCCACTTCCCCGAAGAAGGTTCACGTTGGGAGGGTGAGAGTGAGGGTGAGGAGCGTCTCTTCGAGTTCCGTGACCGACGAGTTCTCTCCGGCGGCGAAAAGGAGGCGGGGGAATGACGGGTCGGTGGCGGCGGCGGAGGAGGTGATTGGGAAATGGAGCAGGGAGTTAGGGTTAGGGTTAGGGGCGGATGGTAACCGTGTGGCGACGGAGGCGCTGGGGTTTTGTGTTGCAACGTGGAGGTTCGTTCCGTTCAGGGTGGTTGCTGCGACGTCGTTTTGGTTGGGCTTGGGATTTTGTGGGGACGGGTCGCTTGCCACGTGTCGGAATCTGGCGAGGTTGGAAGCAATCTCCGGAGTGCCAGCTAAGCTCATTCTGGCCGCACATGCCAAGCTCGCACGTGCCTTCACGCTCCGCCGCGAATTGCAAGAGGGATGGGACGAGTCTTGA 726 0.6157 MKKGGKACALCNQQASLYCPSDSAFLCRNCDATVHGANFLVARHPRHLLCSTCNRFAGIHISAAAPCYRQPTCSSCSPSETDLLSCSSSSESCSTSPKKVHVGRVRVRVRSVSSSSVTDEFSPAAKRRRGNDGSVAAAEEVIGKWSRELGLGLGADGNRVATEALGFCVATWRFVPFRVVAATSFWLGLGFCGDGSLATCRNLARLEAISGVPAKLILAAHAKLARAFTLRRELQEGWDES* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2242 241 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 227 - -
Lja3g2242 241 CDD Bbox1_BBX-like 7 49 - -
Lja3g2242 241 ProSiteProfiles Zinc finger B-box type profile. 3 49 IPR000315 GO:0008270
Lja3g2242 241 PANTHER B-BOX ZINC FINGER PROTEIN 32-LIKE 5 227 - -
Lja3g2242 241 Pfam B-box zinc finger 7 44 IPR000315 GO:0008270
Lja3g2242 241 SMART bboxneu5 3 49 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2242 Lja-Chr3 26632938 26634449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2242 8 241 C2C2-CO-like Transcription Factor Family AT3G21150 31.799 5.89e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja3g2242 zf-B_box 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2242 - - gmx:100781783 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2242 3 26632938 26634449 Lja3g2242 3 26632938 26634449 ECH