Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2235 ATGGCGAAGAAATCGCAGAAAAGCCTCAAGAACAACACTGCTTCCACTAACAACAGAAGAAGTAAGAATAAGACACCAAAACCAGTGAAACGGACACGCAAAACCACCTCAAGAGACTCACCTCCACAGCGAAGCTCAATCTTCCGGGGTGTCACAAGACATCGATGGACTGGTCGCTATGAGGCTCATTTATGGGATAAGAATTGCTGGAATGAATCACAGACCAAGAAAGGAAGACAAGTATATCTAGGGGCATATGACAATGAAGAAGACGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAACACACCATTCTCAACTTTCCATTATCAAATTATCCAGAGGAGCTCAAGGAAATGGAGGGACAGTCAAAAGAAGAATACATTGGATCCTTAAGAAGAAGAAGCAGTGGGTTCTCTCGAGGAGTCTCAAAATACAGAGGAGTTGCAAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCTCGGGCAACAAATATCTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGCCATAGCATATGACAGGGCAGCCATAAAGTATCGAGGACTTAATGCCATTACAAACTTCGACCTCAGCCGTTACATCAAATTGTTACGTCCTCAAACTCAAGACAGCAACAACCATCAAGACCAGACTAGCAATCAAGAACTCGAGGTAGAGTTTGTTTCCGATGAGCTTGGCTCAACTACGGGTGAGACCGCACAAGATGATGCGGTCTCAACATCTTCAACAATTGGCCTTCTCTTACAACCGTTCAAATTCAAAGAAATGCTAGAAAAGACTTCTTCAGCTTTAGCACCAGTAGAGTCAACGACCCTTCCTCGACGAACATTTCCTGAAGATATTCAAACAATATTTGAAAATGAAGATTCAAGTATCTACACTGAAAATGATGACATCATATTCGGTGACTTGAGCTCAATTGCTGCCCCAATTTTTCATTTCGAGCTTGATACTTAG 1011 0.4352 MAKKSQKSLKNNTASTNNRRSKNKTPKPVKRTRKTTSRDSPPQRSSIFRGVTRHRWTGRYEAHLWDKNCWNESQTKKGRQVYLGAYDNEEDAARAYDLAALKYWGQHTILNFPLSNYPEELKEMEGQSKEEYIGSLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVSGNKYLYLGTYATQEEAAIAYDRAAIKYRGLNAITNFDLSRYIKLLRPQTQDSNNHQDQTSNQELEVEFVSDELGSTTGETAQDDAVSTSSTIGLLLQPFKFKEMLEKTSSALAPVESTTLPRRTFPEDIQTIFENEDSSIYTENDDIIFGDLSSIAAPIFHFELDT* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2235 336 SMART rav1_2 47 119 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 ProSiteProfiles AP2/ERF domain profile. 47 113 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 SUPERFAMILY DNA-binding domain 148 209 IPR016177 GO:0003677
Lja3g2235 336 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 2 322 - -
Lja3g2235 336 Gene3D AP2/ERF domain 47 115 IPR036955 GO:0003700|GO:0006355
Lja3g2235 336 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Lja3g2235 336 Pfam AP2 domain 148 199 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 Pfam AP2 domain 48 105 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 SUPERFAMILY DNA-binding domain 46 115 IPR016177 GO:0003677
Lja3g2235 336 MobiDBLite consensus disorder prediction 1 51 - -
Lja3g2235 336 CDD AP2 46 115 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 CDD AP2 148 209 IPR001471 GO:0003700|GO:0006355
Lja3g2235 336 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g2235 336 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2235 Lja-Chr3 26573663 26578608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2235 43 211 AP2-EREBP Transcription Factor Family AT5G57390 72.781 3.21e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja3g2235 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2235 K09285 - pop:18097139 452.981