Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2234 ATGGAAAACTACGAGAAACTGGAGAAGGTAGGAGAAGGCACATACGGCAAAGTCTACAAAGCCAAAGAGAAATCCACCGGCCAAGTCGTCGCTCTCAAGAAAACCCGTCTCGAGATGGACGAAGAAGGCGTCCCTCCGACCGCCCTCCGCGAAGTCTCCCTCCTCCAGATGCTCTCCCAATCCATCTACATCGTCCGCCTCCTCAAAGTCGAGCACGTCGACAAAACCCCCAAAAACAACAACCACCACCCCTCCGCCGCCGCCGACCACCCTCCTCCGCCGTCTAAACCCCTCCTCTACCTCGTCTTCGAGTACCTCGACACCGATCTCAAGAAATACATCGATACCTACCGCAAGGGGCCAAACCCTAGGCCGCTTCCGCCTACTTTGATTCAGAGTTTTCTGTTTCAGCTCTGTATGGGTGTTGCGCATTGTCATAGTCACGGTGTTCTCCACCGCGATCTCAAGCCGCAGAATCTTCTGCTTGATCAGCAGAAGGGGATTCTCAAGATTGCTGATCTTGGGCTTGGTCGCGCTTTTACTGTTCCTCTCAAGAGCTATACTCATGAGATTGTTACTCTCTGGTATAGGGCGCCAGAGGTTCTTCTCGGTTCGACGCATTACTCCACCGGTGTTGATATGTGGTCTGTTGGTTGCATTTTTGCTGAGATGGCGAGAAGGCAAGCTCTGTTTCCGGGGGATTCTGAATTCCAGCAGCTCCTTAACATTTTCAAGGTTTTGGGTACTCCAACGGAAGAGCAATGGCCAGGAGTTACTTCGCTGCGTGATTGGCATGTGTACCCTCGGTGGGAGCCTCAGACATTGGCAAGGGCTGTGCCCTCTTTAGGACCTGAGGGTGTGGACCTTCTCTCGAAAATGCTCAAGTACAATCCTGCTGATAGAATTTCTGCCAAAGCAGCACTTGATCATCCCTACTTTGATACTCTTGACAAGTCTCAATATTGA 966 0.5166 MENYEKLEKVGEGTYGKVYKAKEKSTGQVVALKKTRLEMDEEGVPPTALREVSLLQMLSQSIYIVRLLKVEHVDKTPKNNNHHPSAAADHPPPPSKPLLYLVFEYLDTDLKKYIDTYRKGPNPRPLPPTLIQSFLFQLCMGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMARRQALFPGDSEFQQLLNIFKVLGTPTEEQWPGVTSLRDWHVYPRWEPQTLARAVPSLGPEGVDLLSKMLKYNPADRISAKAALDHPYFDTLDKSQY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2234 321 ProSiteProfiles Protein kinase domain profile. 4 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2234 321 Pfam Protein kinase domain 4 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2234 321 SMART serkin_6 4 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2234 321 SUPERFAMILY Protein kinase-like (PK-like) 1 316 IPR011009 -
Lja3g2234 321 Gene3D Transferase(Phosphotransferase) domain 1 108 321 - -
Lja3g2234 321 MobiDBLite consensus disorder prediction 75 94 - -
Lja3g2234 321 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 321 - -
Lja3g2234 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Lja3g2234 321 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lja3g2234 321 Gene3D Phosphorylase Kinase; domain 1 1 107 - -
Lja3g2234 321 PANTHER CELL DIVISION PROTEIN KINASE 1 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2234 Lja-Chr3 26564890 26568173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2234 1 321 Core Cell Cycle Gene Families AT3G54180 80.374 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Lja3g2234 Pkinase 2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2234 K07760 - gmx:100805119 568.926