Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2226 ATGGGGATTTATCTAAGCTCCCCCAAAACCGAGAAGGCCTCTGACGATGGTGAGAATGACAGGCTTCGCTATGGTTTGTCTTCCATGCAGGGCTGGCGTGCTTCCATGGAAGATGCTCATGCAGCTTTACCATGTTTGGATGAATCTACATCTTACTTTGCTGTTTATGATGGCCATGGAGGCAAAGCAGTTTCTAAATTCTGTGCTAAGTATCTACACCAGCAGATGCTTAAGCATGAAGCTTACATAGCTGGAGATATAGGCACATCTTTACAGAAAACTTTCCTCAGAATGGATGAGATGATGCGCGGACAAAGAGGGTGGAGAGAGTTGGCAGTCTTGGGAGATAAAATGGAAAAGTTATCTGGTATGCTTGAGGGGTTGATATGGTCTCCTAGAAGTAGTGAAGCCAATGACCGTGTCGATGATTGGGCTTTTGAGGAGGGGCCCCATTCTGATTTCACTGGACCAAACTCTGGAAGCACAGCTTGTGTGGCTGTCATCCGAGGAAACAAACTTGTTGTCGCAAATGCTGGTGATTCTAGATGTGTAATATCAAGGAAGGGCCAGGCACACAATTTGTCTAAAGATCACAAGCCTGACCTTGAGGTTGAGAAAGACAGGATTCTGAAAGCTGGTGGTTTCATCCAAGTTGGACGGGTCAACGGAAGTTTGAACTTGGCTAGAGCAATCGGAGATATGGAATTCAAGCAAAACAAGTATTTACCTGCTGAAAAGCAGATTGTGACAGCTGATCCAGACATAACTTCAGTTGAGCTTTGCGATGATGATGAATTTCTTGTAATTGCTTGTGATGGGATATGGGATTGCATGTCTAGCCAACAGCTTGTGGACTTTATACAGGGACAGTTAAAAACAGAGAATAAGCTTTCTGTGGTTTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACAGCTGGTGGTGAGGGATGTGATAACATGACCATGATCCTGATCCAGTTCAAAAGTTCTTGGAATCCAGACACTTCTGCTGCAAACCAGACTGAGTCGTCTGCTCAACCGTCTGAGGCTGATAGTAGTTCAGACAATCAGAGTGAATTTCAGACCTCAGTAGATGGCCATTGA 1107 0.4472 MGIYLSSPKTEKASDDGENDRLRYGLSSMQGWRASMEDAHAALPCLDESTSYFAVYDGHGGKAVSKFCAKYLHQQMLKHEAYIAGDIGTSLQKTFLRMDEMMRGQRGWRELAVLGDKMEKLSGMLEGLIWSPRSSEANDRVDDWAFEEGPHSDFTGPNSGSTACVAVIRGNKLVVANAGDSRCVISRKGQAHNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQNKYLPAEKQIVTADPDITSVELCDDDEFLVIACDGIWDCMSSQQLVDFIQGQLKTENKLSVVCEKVFDRCLAPTAGGEGCDNMTMILIQFKSSWNPDTSAANQTESSAQPSEADSSSDNQSEFQTSVDGH* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2226 368 SUPERFAMILY PP2C-like 3 329 IPR036457 -
Lja3g2226 368 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 340 - -
Lja3g2226 368 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g2226 368 Gene3D - 1 329 IPR036457 -
Lja3g2226 368 SMART PP2C_4 13 326 IPR001932 -
Lja3g2226 368 MobiDBLite consensus disorder prediction 334 368 - -
Lja3g2226 368 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Lja3g2226 368 CDD PP2Cc 23 328 IPR001932 -
Lja3g2226 368 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Lja3g2226 368 PANTHER PROTEIN PHOSPHATASE 2C 1 340 IPR015655 GO:0004722|GO:0006470
Lja3g2226 368 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Lja3g2226 368 Pfam Protein phosphatase 2C 155 313 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2226 Lja-Chr3 26484050 26491705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2226 1 334 PP2C-type Phosphatase Gene Family AT2G25070 76.119 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2226 K17499 - gmx:100499713 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2226 3 26484050 26491705 Lja3g2226 3 26484050 26491705 ECH