Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2215 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTTGTAAGGTTGGATGATCTGGATTCCAATTTATCTATGTCAACTAGTTCTCCTGGTGGGATGAAGAACTTTGGATTTAATTTCGAATCTTGGCGTCCTCATCGTGAGAGAAAAAATACATCAAAATCCTTTAGACTAGGAGTGAAGAGGGGATCAGATGGACTAAAAACATTTGGAAGAACAATCAGAAGTGGGGTCGCCTGGTCAGTGTTCCCAGAAGATCTTAAAGTCTCAGAGAAAAAAGTATTTGACCCTCAAGATAAGATCCTTCTGTATTGGAACAAGTTTTTCGAGATTCTATGCATTTTGTCTGTAGCTTGTGATCCCTTCTTCTTCTACATCCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAACAAGCTAGCAAAGTTTGCCGCAATTTTGAGAACAATTTGCGATGTCATTTATGGTCTCCGCATAGTTTTTCAATTCCACACTGCTTACATCGCGCCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCGTACACAGATTGGCAAGAGATATTTGCAACGTTACTTCATTGTTGACTTCATTTCTATTCTGCCTATGCCACAGATTATAGTGTTAAAATATCTTAACCAAGCAAGACGTGTGGAGGTATTGGCCACAAAAACAGCACTCTTGAGGATTGTCATCCTGCAATATTTCCCAAGATTTCTACGCTTTATACCATTAGCTTCTGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAAAATGCATTGCTCGGCGCCATATACTATTTGATCTGGTATATGCTTGCTAGCCATATAACGGGTTCTGTGTGGTACTTACTAGCTATAGAAAGGAACGACACATGCTGGAAGAATGCCTGCAAAGAAGTTGAAGGCTGCAACACACATTTCTTGTATTGTGGGAGTACAAGTAAGCACATGACAGGTTATGAAAGTTGGAGAAATATCAGCGAGAATGTTCTTAGAAGTAAATGTTTTGTTGAGGACGACTCATCAGCATTTAATTATGGAATCTTCTCTCAAGCTATACAGTCTGGTATTGTTGCTTCCATAGAAGTCTTTCCAAAATTCTGCTACTGTTTATGGTGGGGCCTTCAAAATTTGAGCACACTTGGTCAGGGGCTTCTAACAAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATCATGGGGCTCGTCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAGTGGATGCATCACCGCTTGCTTCCTCAAGAGCTAAGGGAAAGAGTCAGACGCTACGACCAATACAAGTGGCTGAACACCCGAGGTGTAGATGAAGAGAGCTTGGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGTCATCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCGAACATGGACGAAAGGTTGCTTGATGCTATATGTGAGCGATTGAAACCAAGTTTATATACAGAGGGAACTTACATAGTTAGAGAAGGGGATCCAGTTAATGAGATGTTGTTCATCATTCGTGGTCATCTAGAGAGTGTGACCACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGACTTTTGAAGGAAGGTGACTTCTGTGGCGAAGAGCTGCTAACATGGGCACTGGACCCAAAATCTGCTGCTAACTTGCCATCATCTACAAGGACAGTGAAAGCCATAAATGAGGTGGAGGCATTTGCTTTGGAGGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTCAGGCATATCCACAGCAGACAGGTTCAGCACACCTTCCGATTCTACTCGCAGCAGTGGAGGACATGGGCTGCAATCTACATTCAAGCTGCGTGGAGACGACATTCCAGGAGGAAAATCTTAGAACAACGCCGGAAGGAGGAAGAGGAATTGTATGAGTCTGATGATTATGAAGGAAGTGACGATTCTGCAAGGGCCTTGGTCTCGCCGCGTGGTGAAGGTTCATCATCCAGGCTTGGACTTCACTCAACCATCTATGCTTCTCGCTTTGCTTCTAATGCGCTTCGTGGTCATAGGCTTCGTTCTTCAAGTTCCATGAACCTGATGAAAATCCAAAAGCCCCAAGAGCCTGATTTCAGTGCTCTTGATAAAGAGTGA 2250 0.4271 MFDSGYKSQYIGGQKEKFVRLDDLDSNLSMSTSSPGGMKNFGFNFESWRPHRERKNTSKSFRLGVKRGSDGLKTFGRTIRSGVAWSVFPEDLKVSEKKVFDPQDKILLYWNKFFEILCILSVACDPFFFYIPYFNHKSFCLAIDNKLAKFAAILRTICDVIYGLRIVFQFHTAYIAPSSRVFGRGELVIDRTQIGKRYLQRYFIVDFISILPMPQIIVLKYLNQARRVEVLATKTALLRIVILQYFPRFLRFIPLASEVKKTAGVFSENALLGAIYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVEGCNTHFLYCGSTSKHMTGYESWRNISENVLRSKCFVEDDSSAFNYGIFSQAIQSGIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMLFIIRGHLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHSRRKILEQRRKEEEELYESDDYEGSDDSARALVSPRGEGSSSRLGLHSTIYASRFASNALRGHRLRSSSSMNLMKIQKPQEPDFSALDKE* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2215 749 SMART cnmp_10 509 640 IPR000595 -
Lja3g2215 749 Gene3D Jelly Rolls 507 627 IPR014710 -
Lja3g2215 749 PRINTS EAG/ELK/ERG potassium channel family signature 422 431 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2215 749 PRINTS EAG/ELK/ERG potassium channel family signature 404 415 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2215 749 PRINTS EAG/ELK/ERG potassium channel family signature 166 175 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2215 749 PRINTS EAG/ELK/ERG potassium channel family signature 378 395 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2215 749 PRINTS EAG/ELK/ERG potassium channel family signature 472 479 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2215 749 ProSiteProfiles cAMP/cGMP binding motif profile. 509 592 IPR000595 -
Lja3g2215 749 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 746 - -
Lja3g2215 749 Gene3D Helix hairpin bin 436 500 - -
Lja3g2215 749 SUPERFAMILY cAMP-binding domain-like 439 629 IPR018490 -
Lja3g2215 749 MobiDBLite consensus disorder prediction 675 702 - -
Lja3g2215 749 Pfam Cyclic nucleotide-binding domain 530 619 IPR000595 -
Lja3g2215 749 ProSiteProfiles IQ motif profile. 645 674 IPR000048 GO:0005515
Lja3g2215 749 MobiDBLite consensus disorder prediction 727 749 - -
Lja3g2215 749 SUPERFAMILY Voltage-gated potassium channels 101 431 - -
Lja3g2215 749 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 746 - -
Lja3g2215 749 Gene3D - 112 434 - -
Lja3g2215 749 CDD CAP_ED 509 640 IPR000595 -
Lja3g2215 749 Pfam Ion transport protein 109 436 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2215 Lja-Chr3 26330920 26334686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2215 6 745 Ion Channels AT1G15990 68.449 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2215 K05391 - gmx:100810453 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2215 3 26330920 26334686 Lja3g2215 3 26330920 26334686 ECH