Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2208 ATGGACTGTTCAGCATGGATTAACACTTCATTGGATCTCAACATTCATTCCCACAAAGTTCATCAACAAGTTGTTCCTAAGAAGGAGGTGGAAAGCAAGCTTTTCTCTTTGGGGATGACTGAGTTTTCTGTTGAAGAAGAGTCAACCAATGAGTTGGAGGAGGAGCTGAAGCGGGTGACAGCAGAAAACAAAAAATTGGTTGAAATGCTCTCAGTGGTGTGTGAGAACTACAACACTTTGAGAAGCCAATTGATGGAATACATGAGCAGAAATCCTGAGAAGGAGCTCAGCCCATCATCAAAGAAAAGGAAGTCTGAGAGCAGCAATAACAACAGTGATCTGGTGGGGGTTAACAATGGAAACTCTGAGAGCAGCTCTACTGATGAAGATTCTTTCAAGAAACCGAGGGAAGAAACCATCAAAGCAAAGATTTCAAGAGCTTATGTCAGGACTGAAGCAACTGATACAGGATTTGTTGTGAAAGATGGATACCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGTAGATGATCAATCTGTCCTGGTTGCTACTTATGAAGGGGAGCACAATCATCCTCAACCTTCTCAAATGGAGGCAACATCAGGCTCCGGCCGCAATGTGAGCCTAGTAGGCTCCATGCCTTCTTCAAAGTCTCTCAGCTCTCCTGCTCCAGCAGTTGTAACTCTCGACTTGACAAAATCTCGGTGCAGCAATGATTCCAAGAATGCAGAACCCAGAAAAGATTCAGCTAAGTTACCACAGGTTTTGGTGGAACAGATGGCTACTTCTTTGACCACAGATCCTAATTTTAGAGCAGCACTTGTTGCAGCCATCTCAGGAAGGCTTTTGCACCAGAATTGA 942 0.4395 MDCSAWINTSLDLNIHSHKVHQQVVPKKEVESKLFSLGMTEFSVEEESTNELEEELKRVTAENKKLVEMLSVVCENYNTLRSQLMEYMSRNPEKELSPSSKKRKSESSNNNSDLVGVNNGNSESSSTDEDSFKKPREETIKAKISRAYVRTEATDTGFVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQPSQMEATSGSGRNVSLVGSMPSSKSLSSPAPAVVTLDLTKSRCSNDSKNAEPRKDSAKLPQVLVEQMATSLTTDPNFRAALVAAISGRLLHQN* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2208 313 SUPERFAMILY WRKY DNA-binding domain 158 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g2208 313 Coils Coil 42 69 - -
Lja3g2208 313 Pfam WRKY DNA -binding domain 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g2208 313 ProSiteProfiles WRKY domain profile. 159 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g2208 313 PANTHER TRANSCRIPTION FACTOR 1 313 - -
Lja3g2208 313 MobiDBLite consensus disorder prediction 109 126 - -
Lja3g2208 313 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 313 IPR044810 GO:0003700
Lja3g2208 313 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g2208 313 MobiDBLite consensus disorder prediction 213 233 - -
Lja3g2208 313 MobiDBLite consensus disorder prediction 89 137 - -
Lja3g2208 313 MobiDBLite consensus disorder prediction 216 233 - -
Lja3g2208 313 Gene3D WRKY domain 142 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2208 Lja-Chr3 26258662 26261385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2208 35 313 WRKY Transcription Factor Family AT1G80840 55.326 1.06e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g2208 WRKY 3.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2208 - - gmx:100807966 458.759