Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2206 ATGGTTCCAGAAAATCCCAGAAACATAATCTTCAACAAATACGAGATGGGTCGTGTTCTAGGGCAAGGAAACTTCGCCAAGGTCTACCATGGCAGAAACCTCGCCACAAACGAAAACGTCGCCATCAAAGTCATCAAGAAAGAGAAGCTCAAGAAGGACAGGCTTGTGAAGCAGATCAAGCGTGAGGTTTCCGTCATGCGCCTCGTTCGCCACCCTCACATCGTTGAGCTCAAAGAAGTCATGGCCACCAAGGGGAAAATCTTCCTCGTCATGGAGTATGTCAAAGGCGGCGAGCTTTTCACCAAGGTCAACAAGGGCAAGCTGAATGAAGACGATGCTAGGAAGTATTTTCAGCAGTTGATAAGTGCTGTGGATTTCTGCCATAGCCGCGGCGTCACCCACCGTGATCTCAAGCCGGAGAATCTACTCCTGGATGAGAATGAGGATCTTAAGGTTTCCGATTTCGGCCTCTCCGCGTTGCCGGAGCAGCGGCGGGATGATGGGATGCTTGTTACGCCGTGCGGTACACCGGCTTATGTCGCGCCGGAGGTTCTGAAGAAGAAGGGGTATGATGGTTCTAAGGCTGATATATGGTCTTGTGGGGTTATCCTATATGCTTTGCTTTCTGGGTATCTTCCTTTTCAAGGGGAGAATGTGATGAGGATTTATAGGAAGGCTTTCAAGGCTGAATATGAGTTTCCTGAATGGATTTCGCCTCAGGCGAAGAATTTGATTTCGAATCTGCTGGTTGCTGATCCTGAGAAGAGGTATTCAATCCCTGAGATCATCAGTGATCCTTGGTTCCAATATGGGTTCATGAGACCCCTTGCTTTTTCGATGAAGGAGTCTGCGGTTGGGGAAGACAGCACCATTGATCATTTTGGTGGGGAGGAGGAAGAGGTGCCTGAATTGGTGGCTGCAATGGGGAAGCCTGCGCGCCCGTTTTATAATGCGTTCGAGATAATTTCGTCGCTGTCGCACGGGTTTGATCTTAGGAGCTTGTTTGAGACGAGGAAGCGGTCGCCTTCTATGTTCATATCAAAATACTCAGCGTCCGCGGTGGTGGCGAAGCTTGAGGGGATGGCGAAGAAGCTGAATTTCAGGGTCACGGGGAAGAAGGAGTTCACGGTGAGGATGCAGGGGATGAAGGAGGGGAGGAAAGGGAAGCTGGCAATGACAATGGAGGTGTTTGAGGTGGCACCAGAGGTGGCGGTGGTTGAGTTTTCTAAGTCTGCTGGAGACACGCTGGAGTATGTTAAGTTCTGTGAGGAACAAGTGAGACCTTCCCTCAAAGACATTGTTTGGAGCTGGCAGGGTGAGATTAAAGTGTGA 1332 0.5 MVPENPRNIIFNKYEMGRVLGQGNFAKVYHGRNLATNENVAIKVIKKEKLKKDRLVKQIKREVSVMRLVRHPHIVELKEVMATKGKIFLVMEYVKGGELFTKVNKGKLNEDDARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRRDDGMLVTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLSGYLPFQGENVMRIYRKAFKAEYEFPEWISPQAKNLISNLLVADPEKRYSIPEIISDPWFQYGFMRPLAFSMKESAVGEDSTIDHFGGEEEEVPELVAAMGKPARPFYNAFEIISSLSHGFDLRSLFETRKRSPSMFISKYSASAVVAKLEGMAKKLNFRVTGKKEFTVRMQGMKEGRKGKLAMTMEVFEVAPEVAVVEFSKSAGDTLEYVKFCEEQVRPSLKDIVWSWQGEIKV* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2206 443 ProSiteProfiles Protein kinase domain profile. 14 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2206 443 Gene3D Transferase(Phosphotransferase) domain 1 5 307 - -
Lja3g2206 443 ProSiteProfiles NAF domain profile. 311 336 IPR018451 GO:0007165
Lja3g2206 443 PANTHER CBL-INTERACTING PROTEIN KINASE 16 5 441 - -
Lja3g2206 443 Pfam Protein kinase domain 14 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2206 443 CDD CIPK_C 317 431 - -
Lja3g2206 443 Gene3D Kinase associated domain 1, KA1 312 436 - -
Lja3g2206 443 PANTHER - 5 441 - -
Lja3g2206 443 SUPERFAMILY Protein kinase-like (PK-like) 10 269 IPR011009 -
Lja3g2206 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lja3g2206 443 ProSitePatterns Protein kinases ATP-binding region signature. 20 47 IPR017441 GO:0005524
Lja3g2206 443 SMART serkin_6 14 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2206 443 Pfam NAF domain 315 370 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2206 Lja-Chr3 26213357 26215942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2206 4 440 CBL-interacting serine-threonine protein kinases AT5G10930 61.959 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja3g2206 Pkinase 4.9e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2206 - - lja:Lj3g3v2118210.1 834.328