Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2201 ATGTCATCTATTTGTCGTACAAGGGTATGTTACATTTCCATTTATGAAGGAGGACAAGAAGCATACTGGACATATGGTGGTCTTTCCCGAGGCCTCCACGAGGGTGCAAAAGTGATTGAGAAGCATGCTGGACAGCTCTGTGTTCTAGCAGAAGATTGCGACCAGCCTGACTATGTTAAACTTGTCAAGGCCCTCTGCGCAGAGCACAATGTTAGCCTGATCTCTGTTCCAAGTGCAAAGACACTTGGAGAATGGGCTGGAATTGATTCAGAAGGAAAAGCTAGGAAGGTAAGTGGTTGCTCCTGTGTGGTTGTCAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTTCATTTTCACCCGTTCGTTGCACGGCGATTAAGTTTATTTTTGCTACCAATTCAATATTTGAGCAAAATAACCCACAATGGAAAAAGTAGATATCAGAGTAATAATTATCTTCCTAACAGTAGCATGAATCTTACAACGATTGACTTTCGCAACAATTGTCCAGGTTTCTTTGGAGGCATCAATTTTGTGCTGGAAAATGCAAGGAATGACGGAGGAGAAATGTCACATAAGGGGGCATATATAGTTGAAATTAGGGTTAATGATGTCTAA 636 0.4182 MSSICRTRVCYISIYEGGQEAYWTYGGLSRGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLISVPSAKTLGEWAGIDSEGKARKVSGCSCVVVKDFGEEHEAYNVVLQHVHFHPFVARRLSLFLLPIQYLSKITHNGKSRYQSNNYLPNSSMNLTTIDFRNNCPGFFGGINFVLENARNDGGEMSHKGAYIVEIRVNDV* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2201 211 PRINTS Ribosomal protein S12E family signature 32 48 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2201 211 PRINTS Ribosomal protein S12E family signature 95 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2201 211 SUPERFAMILY L30e-like 22 122 IPR029064 -
Lja3g2201 211 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 25 104 IPR004038 -
Lja3g2201 211 Gene3D - 20 124 IPR029064 -
Lja3g2201 211 PANTHER 40S RIBOSOMAL PROTEIN S12 23 123 - -
Lja3g2201 211 PANTHER 40S RIBOSOMAL PROTEIN S12 23 123 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2201 Lja-Chr3 26059806 26067381 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2201 25 122 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 72.277 3.04e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2201 K02951 - gmx:100786733 193.356