Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2199 ATGGTGACCTTGAAAAGGACAAAGCTCAAAGGGCTTGAATTTTGCAGTTCTCAAAGAATAAACAAAGGAGGACAAGAAGCATACTGGACATATGGTGGTCTTTCCCGAGGCCTCCACGAGGGTGCAAAAGTGATTGAGAAGCATGCTGGACAGCTCTGTGTTCTAGCAGAAGATTGCGACCAGCCTGACTATGTTAAACTTGTCAAGGCCCTCTGCGCAGAGCACAATGTTAGCCTGATCACTGTTCCAAGTGCAAAGACACTTGGAGAATGGGCTGGATTGTGCAAGATTGATTCAGAAGGAAAAGCTAGGAAGGCAATGACGATGGTTTCGGAGTGTCGAGCGGACGGATCGGTCGCCGTCAAACAATGCATCCGGTGGCGCGGCAACTTGATCGGAAATTTCGAATCTCGTTGCAGCCATCTATGGCGGTATTGCTTTTTTGACGATCGATCTAATCTGTGTGTGAAATCTGAGCCTTGCACCATAACCGATGCTGAATCTGGAGTTATCTTAATGCAGTGTTTGGTAGAGGCTTATGGAGTGAGAGAAGGGAAAGGGCTTGGAGATCCTGTTCCAATGAACTTCCTCGCTCTCATTCCATATGTCATCTAG 615 0.4732 MVTLKRTKLKGLEFCSSQRINKGGQEAYWTYGGLSRGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLITVPSAKTLGEWAGLCKIDSEGKARKAMTMVSECRADGSVAVKQCIRWRGNLIGNFESRCSHLWRYCFFDDRSNLCVKSEPCTITDAESGVILMQCLVEAYGVREGKGLGDPVPMNFLALIPYVI* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2199 204 PRINTS Ribosomal protein S12E family signature 38 54 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2199 204 PRINTS Ribosomal protein S12E family signature 79 100 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2199 204 SUPERFAMILY L30e-like 27 96 IPR029064 -
Lja3g2199 204 PANTHER 40S RIBOSOMAL PROTEIN S12 29 109 - -
Lja3g2199 204 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 31 106 IPR004038 -
Lja3g2199 204 PANTHER 40S RIBOSOMAL PROTEIN S12 29 109 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2199 204 Gene3D - 25 124 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2199 Lja-Chr3 26029789 26033995 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2199 31 107 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 79.221 3.09e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2199 K02951 - gmx:100786733 154.451