Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2197 ATGTCAGGAGATGAAGCTGCAGTAGTAGTTCCGGCAGCTGAGCCAGCGGCTGTAATTCCTGGCGAGCCTATGGATATCATGACTGCCTTGCAACTGGTGCTCAGAAAGTCAAGGGCATATGGTGGTCTTGCCCGAGGCCTCCATGAGGGTGCAAAAGTGATTGAGAAGCATGCAGGACAGCTCTGTGTTCTAGCAGAAGATTGCGACCAGCCTGACTATGTTAAACTTGTCAAGGCCCTCTGCGCAGAGCACAATGTTAGCCTGCTCACTGTTCCAAGTGCAAAGACACTTGGAGAATGGGCTGGATTGTGCAAGATTGATTCAGAAGGAAAAGCTAGGAAGGTAACTGGCTGCTCCTGTGTGGTTGTCAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTGAAATCCCAATGA 432 0.4954 MSGDEAAVVVPAAEPAAVIPGEPMDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2197 143 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 29 122 IPR004038 -
Lja3g2197 143 PRINTS Ribosomal protein S12E family signature 33 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2197 143 PRINTS Ribosomal protein S12E family signature 47 63 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2197 143 PRINTS Ribosomal protein S12E family signature 88 109 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2197 143 PRINTS Ribosomal protein S12E family signature 113 126 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2197 143 ProSitePatterns Ribosomal protein S12e signature. 29 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lja3g2197 143 Gene3D - 11 143 IPR029064 -
Lja3g2197 143 PANTHER 40S RIBOSOMAL PROTEIN S12 1 143 - -
Lja3g2197 143 SUPERFAMILY L30e-like 23 141 IPR029064 -
Lja3g2197 143 PANTHER 40S RIBOSOMAL PROTEIN S12 1 143 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2197 Lja-Chr3 26009893 26011921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2197 19 143 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 1.14e-66 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2197 K02951 - gmx:100786733 259.996