Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2192 ATGAATCTTCTAAAGCCAGAGCCATGTTCATCTGAAAATTTGAACATCTTATTTTCAGAAAATGAAGATAAAAAACACCCACTTGATCAAGCTCCTCCTCCTCTTTTACTAGATCTAAGTCTCTCCAACAAGGACTCATCTGGTGATGAATCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCACACAGATTTATCAGAAAATTCCTCAGAATCTAGTCATGAAAATGAACTGGATCCTAGAGTTTTCTCATGCAACTACTGCCAGAGAAAATTTTATAGCTCCCAGGCACTTGGGGGGCACCAGAATGCACACAAACGTGAAAGAACATTGGCTAGAAGAGGGTACAGAGCTGGTGCTGCAGCTTCACTGGATTTTGGACAGAGGTACTACCCCAGCATGGCTTCTCTTCCTTCGTTTGGCTTATGTAACAAATCACTTGGAATTCAGGTGCATTCTATGATCAACAAACCTTCTTACCAAACACCACTTTTTGGTTTTTTGCATTCCCATGGCCAAAATGGGTGGCAGAGGCAGGGACTGCCTTTTGATTCACAACCAGCAATTGGGAAGCTAACATCACCAAGGAATTTTCATGTGGGGGCAGAATCTGAATCACCCTTGCCTGGTGGCAATCCAAAGTTTGGCATGTTTTCTACAAGGAAGGTTACAGAGGGATTTGGAGGTTACAGTTTGGGTAGCGGTAGTAGTAGCAGCAGCAGTAGCACTACGCATTTGAAGTCTAAACAAGAGAAGTTACAGAAGCTTGATTTGTCTCTCAAGCTCTAA 789 0.4271 MNLLKPEPCSSENLNILFSENEDKKHPLDQAPPPLLLDLSLSNKDSSGDESKPELNLLNCFHTDLSENSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYRAGAAASLDFGQRYYPSMASLPSFGLCNKSLGIQVHSMINKPSYQTPLFGFLHSHGQNGWQRQGLPFDSQPAIGKLTSPRNFHVGAESESPLPGGNPKFGMFSTRKVTEGFGGYSLGSGSSSSSSSTTHLKSKQEKLQKLDLSLKL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2192 262 Gene3D Classic Zinc Finger 61 125 - -
Lja3g2192 262 MobiDBLite consensus disorder prediction 231 247 - -
Lja3g2192 262 MobiDBLite consensus disorder prediction 231 262 - -
Lja3g2192 262 SUPERFAMILY beta-beta-alpha zinc fingers 80 110 IPR036236 -
Lja3g2192 262 MobiDBLite consensus disorder prediction 248 262 - -
Lja3g2192 262 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 20 262 - -
Lja3g2192 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 262 IPR044246 GO:0009788
Lja3g2192 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Lja3g2192 262 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Lja3g2192 262 MobiDBLite consensus disorder prediction 15 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2192 Lja-Chr3 25957588 25958376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2192 10 262 C2H2 Transcription Factor Family AT5G10970 42.248 3.62e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g2192 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2192 - - gmx:102666245 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2192 3 25957588 25958376 Lja3g2192 3 25957588 25958376 ECH