Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2182 ATGGCTTCGGTGGCTAAGAAGGTGTGCGTTACTGGTGCTGGAGGATTCGTAGCCTCTTGGCTCGTTAAGCTTCTCCTTTCCAAAGGATACACTGTTCATGGAACTGTCAGACAACCCGGAAGTCCCAAATATGAACACTTGCTGAAACTGGAGAAAGCTTCTGAGAACCTCACTCTCTTCAAGGCAGATCTCTTGAATTATGAATCTGTTCACTCCGCAATTCTTGGATGCACTGCTGTTTTCCATGTTGCTAGCCCTGTACCCTCAACTACATCATCCAATCCTGAGGTAGAAGTGATTGAGCCAGCAGTGAAGGGAACTGCTAATGTACTTGAAGCTTCTCTTCAAGCTAAAGTGGAACGAGTTGTCTTTGTATCATCTGAAGCTGCTGTCTGCATGAGCCCTAATTTACCCAAAGATAAAGTGATTGATGAGTCCTATTGGTCTGATAAAGATTACTGCAAGAAAACTCAGAACTGGTATTGTTATTCCAAGACAGAGGCAGAGGAGCAGGCCCTCGACTTTGCAAAAAGAACTGGGCTTAGTGTTGTAAGCATTTGTCCTACCGTAGTATTGGGGCCAATTTTACAGTCCACTGTTAATGCAAGCACCTTGATTCTCCTCAAACTTTTAAAAGCTGAAGGTTCTGACTCGATGGAGAACAGGCTCAGTTGGATAGTAGATGTTGGAGATCTAGTTGATGCAGTACTTTTGGCTTATGAGAAGCTTGAGGCAGAAGGGAGATACATATGCACTTCACACCCTATCAAGAAACGGGATTTGGTGGAGAAATTAAAGAGCATATATCCCTATTACAAGTACCCTACAAAGTTTACTGAAGTGGATAGTTACAGAAGGTTGACCTCAGAGAAACTGCAGAGGTTGGGTTGGAAGTCCAGGCCATTGGAGGAAACACTCATTGATTCGGTTGAGAGCTATAGAGAGGCTGGACTCCTGCAATCAGAATAA 969 0.4396 MASVAKKVCVTGAGGFVASWLVKLLLSKGYTVHGTVRQPGSPKYEHLLKLEKASENLTLFKADLLNYESVHSAILGCTAVFHVASPVPSTTSSNPEVEVIEPAVKGTANVLEASLQAKVERVVFVSSEAAVCMSPNLPKDKVIDESYWSDKDYCKKTQNWYCYSKTEAEEQALDFAKRTGLSVVSICPTVVLGPILQSTVNASTLILLKLLKAEGSDSMENRLSWIVDVGDLVDAVLLAYEKLEAEGRYICTSHPIKKRDLVEKLKSIYPYYKYPTKFTEVDSYRRLTSEKLQRLGWKSRPLEETLIDSVESYREAGLLQSE* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2182 322 Pfam NAD dependent epimerase/dehydratase family 8 245 IPR001509 -
Lja3g2182 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 318 IPR036291 -
Lja3g2182 322 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 6 319 - -
Lja3g2182 322 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 6 319 - -
Lja3g2182 322 CDD FR_SDR_e 8 297 - -
Lja3g2182 322 Gene3D - 2 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2182 Lja-Chr3 25777370 25780655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2182 1 319 Monolignol Biosynthesis Gene Families AT2G33590 61.371 4.01e-137 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2182 - - lja:Lj3g3v2171530.3 575.089